miRNA 85 details

Id Micro85
SequenceCCGACCTTAGCTCAGTTGGTG 
Annotated namesptc-miR6478; 
Annotated pre-miRNANone

Targets of miRNA 85

LuluDB transcript

ID Trinity

Target start position

Target end position

Target sequence

BLAST target sequence

Annotation method

Target details
Ll_transcript_102018; FTRINITY_DN54926_c0_g1_i1 697 717 TACCAACTGAGCTAAGGTCGG BLAST psRNATarget
Ll_transcript_102031; FTRINITY_DN54926_c0_g1_i3 937 957 TACCAACTGAGCTAAGGTCGG BLAST psRNATarget
Ll_transcript_102024; FTRINITY_DN54926_c0_g1_i2 1083 1103 TACCAACTGAGCTAAGGTCGG BLAST psRNATarget
Ll_transcript_162541; FTRINITY_DN53281_c1_g2_i1 251 271 TCCCAACTGAGCTATGGTTGG BLAST psRNATarget
Ll_transcript_227820; FTRINITY_DN52739_c0_g1_i8 2987 3007 ACCTAATTGGGTTAAGGTTGG BLAST psRNATarget
Ll_transcript_227813; FTRINITY_DN52739_c0_g1_i5 3417 3437 ACCTAATTGGGTTAAGGTTGG BLAST psRNATarget
Ll_transcript_168370; FTRINITY_DN57336_c1_g2_i2 443 463 GTTCAATCGAGCTAAGGTTGG BLAST psRNATarget
Ll_transcript_168381; FTRINITY_DN57336_c1_g2_i10 443 463 GTTCAATCGAGCTAAGGTTGG BLAST psRNATarget
Ll_transcript_168368; FTRINITY_DN57336_c1_g2_i1 443 463 GTTCAATCGAGCTAAGGTTGG BLAST psRNATarget
Ll_transcript_168383; FTRINITY_DN57336_c1_g2_i12 1238 1258 GTTCAATCGAGCTAAGGTTGG BLAST psRNATarget
Ll_transcript_168382; FTRINITY_DN57336_c1_g2_i11 443 463 GTTCAATCGAGCTAAGGTTGG BLAST psRNATarget
Ll_transcript_168391; FTRINITY_DN57336_c1_g2_i19 508 528 GTTCAATCGAGCTAAGGTTGG BLAST psRNATarget
Ll_transcript_168378; FTRINITY_DN57336_c1_g2_i7 1378 1398 GTTCAATCGAGCTAAGGTTGG BLAST psRNATarget
Ll_transcript_139189; FTRINITY_DN55291_c0_g1_i4 261 281 TGCCAACCGAGCTAGGGTCAG BLAST psRNATarget
Ll_transcript_246141; FTRINITY_DN53377_c9_g2_i1 1507 1527 TTCCAACTGAATTGAGGTTGG BLAST psRNATarget
Ll_transcript_47364; FTRINITY_DN84531_c0_g1_i1 74 94 AGTTAACTGAGTTGAGGTTGA BLAST psRNATarget
Ll_transcript_129759; FTRINITY_DN53412_c1_g1_i1 169 189 AAATCACTGAGCTAAGGTTGG BLAST psRNATarget
Ll_transcript_171813; FTRINITY_DN57052_c2_g1_i1 170 190 CTCCAATTTAGCTGGGGTTGG BLAST psRNATarget
Ll_transcript_234150; FTRINITY_DN52873_c2_g4_i6 752 772 TGCAGACTGAGCTAAGGTTAG BLAST psRNATarget
Ll_transcript_234149; FTRINITY_DN52873_c2_g4_i5 914 934 TGCAGACTGAGCTAAGGTTAG BLAST psRNATarget
Ll_transcript_234154; FTRINITY_DN52873_c2_g4_i8 1021 1041 TGCAGACTGAGCTAAGGTTAG BLAST psRNATarget
Ll_transcript_234153; FTRINITY_DN52873_c2_g4_i7 1183 1203 TGCAGACTGAGCTAAGGTTAG BLAST psRNATarget
Ll_transcript_218257; FTRINITY_DN56380_c0_g2_i4 177 197 ATCCAATTGAGTTGAGTTTGG BLAST psRNATarget
Ll_transcript_121222; FTRINITY_DN58299_c1_g1_i11 1683 1703 GGCCAAATGAGTTAGGGTTGT BLAST psRNATarget
Ll_transcript_121227; FTRINITY_DN58299_c1_g1_i13 2171 2191 GGCCAAATGAGTTAGGGTTGT BLAST psRNATarget
Ll_transcript_121208; FTRINITY_DN58299_c1_g1_i4 3035 3055 GGCCAAATGAGTTAGGGTTGT BLAST psRNATarget
Ll_transcript_121228; FTRINITY_DN58299_c1_g1_i14 3084 3104 GGCCAAATGAGTTAGGGTTGT BLAST psRNATarget
Ll_transcript_121220; FTRINITY_DN58299_c1_g1_i10 3143 3163 GGCCAAATGAGTTAGGGTTGT BLAST psRNATarget
Ll_transcript_218287; FTRINITY_DN56380_c0_g2_i13 177 197 ATCCAATTGAGTTGAGTTTGG BLAST psRNATarget
Ll_transcript_218256; FTRINITY_DN56380_c0_g2_i3 177 197 ATCCAATTGAGTTGAGTTTGG BLAST psRNATarget
Ll_transcript_218268; FTRINITY_DN56380_c0_g2_i7 177 197 ATCCAATTGAGTTGAGTTTGG BLAST psRNATarget
Ll_transcript_78342; FTRINITY_DN85771_c0_g1_i1 389 409 CTCGGATTGGGCTAGGGTTGG BLAST psRNATarget
Ll_transcript_151655; FTRINITY_DN50560_c0_g1_i5 965 984 AACCAACGAGCTAAAGTCGG BLAST psRNATarget
Ll_transcript_151653; FTRINITY_DN50560_c0_g1_i3 965 984 AACCAACGAGCTAAAGTCGG BLAST psRNATarget
Ll_transcript_151650; FTRINITY_DN50560_c0_g1_i2 1084 1103 AACCAACGAGCTAAAGTCGG BLAST psRNATarget
Ll_transcript_151649; FTRINITY_DN50560_c0_g1_i1 1084 1103 AACCAACGAGCTAAAGTCGG BLAST psRNATarget
Ll_transcript_151654; FTRINITY_DN50560_c0_g1_i4 1218 1237 AACCAACGAGCTAAAGTCGG BLAST psRNATarget
Ll_transcript_151658; FTRINITY_DN50560_c0_g1_i8 1306 1325 AACCAACGAGCTAAAGTCGG BLAST psRNATarget
Ll_transcript_151656; FTRINITY_DN50560_c0_g1_i6 1218 1237 AACCAACGAGCTAAAGTCGG BLAST psRNATarget
Ll_transcript_151657; FTRINITY_DN50560_c0_g1_i7 1306 1325 AACCAACGAGCTAAAGTCGG BLAST psRNATarget
Ll_transcript_186823; FTRINITY_DN51847_c0_g1_i9 270 290 GTCCAGTGGAGCTAAGGTTGT BLAST psRNATarget
Ll_transcript_346593; TRINITY_DN50408_c1_g7_i1 136 156 TACCAACTGAGCTAAGGTCGG BLAST psRNATarget
Ll_transcript_346573; TRINITY_DN50408_c1_g4_i1 149 169 TACCAACTGAGCTAAGGTCGG BLAST psRNATarget
Ll_transcript_355279; TRINITY_DN49498_c0_g1_i1 66 86 GTTCAATCGAGCTAAGGTTGG BLAST psRNATarget
Ll_transcript_449661; TRINITY_DN50667_c0_g1_i14 419 439 GTTCAATCGAGCTAAGGTTGG BLAST psRNATarget
Ll_transcript_449647; TRINITY_DN50667_c0_g1_i7 547 567 GTTCAATCGAGCTAAGGTTGG BLAST psRNATarget
Ll_transcript_449645; TRINITY_DN50667_c0_g1_i5 419 439 GTTCAATCGAGCTAAGGTTGG BLAST psRNATarget
Ll_transcript_449649; TRINITY_DN50667_c0_g1_i8 419 439 GTTCAATCGAGCTAAGGTTGG BLAST psRNATarget
Ll_transcript_449660; TRINITY_DN50667_c0_g1_i13 1214 1234 GTTCAATCGAGCTAAGGTTGG BLAST psRNATarget
Ll_transcript_449644; TRINITY_DN50667_c0_g1_i4 1279 1299 GTTCAATCGAGCTAAGGTTGG BLAST psRNATarget
Ll_transcript_435142; TRINITY_DN46666_c5_g2_i19 201 221 TGCCAACCGAGCTAGGGTCAG BLAST psRNATarget
Ll_transcript_435126; TRINITY_DN46666_c5_g2_i9 218 238 TGCCAACCGAGCTAGGGTCAG BLAST psRNATarget
Ll_transcript_499089; TRINITY_DN50231_c3_g6_i1 1488 1508 TTCCAACTGAATTGAGGTTGG BLAST psRNATarget
Ll_transcript_339234; TRINITY_DN48539_c4_g1_i2 145 165 TTTTAACAGGGCTAAGGTTGG BLAST psRNATarget
Ll_transcript_339233; TRINITY_DN48539_c4_g1_i1 844 864 TTTTAACAGGGCTAAGGTTGG BLAST psRNATarget
Ll_transcript_477842; TRINITY_DN53147_c0_g1_i1 34 54 AGTTAACTGAGTTGAGGTTGA BLAST psRNATarget
Ll_transcript_408881; TRINITY_DN51611_c3_g6_i1 225 245 AAATCACTGAGCTAAGGTTGG BLAST psRNATarget
Ll_transcript_369851; TRINITY_DN48641_c2_g2_i8 155 175 TGCAGACTGAGCTAAGGTTAG BLAST psRNATarget
Ll_transcript_369850; TRINITY_DN48641_c2_g2_i7 923 943 TGCAGACTGAGCTAAGGTTAG BLAST psRNATarget
Ll_transcript_369842; TRINITY_DN48641_c2_g2_i1 899 919 TGCAGACTGAGCTAAGGTTAG BLAST psRNATarget
Ll_transcript_369848; TRINITY_DN48641_c2_g2_i5 923 943 TGCAGACTGAGCTAAGGTTAG BLAST psRNATarget
Ll_transcript_369858; TRINITY_DN48641_c2_g2_i14 1168 1188 TGCAGACTGAGCTAAGGTTAG BLAST psRNATarget
Ll_transcript_369856; TRINITY_DN48641_c2_g2_i12 1192 1212 TGCAGACTGAGCTAAGGTTAG BLAST psRNATarget
Ll_transcript_369854; TRINITY_DN48641_c2_g2_i10 1232 1252 TGCAGACTGAGCTAAGGTTAG BLAST psRNATarget
Ll_transcript_506581; TRINITY_DN52584_c0_g3_i1 516 536 ATCCAATTGAGTTGAGTTTGG BLAST psRNATarget
Ll_transcript_324437; TRINITY_DN45397_c0_g1_i6 1030 1049 AACCAACGAGCTAAAGTCGG BLAST psRNATarget
Ll_transcript_324443; TRINITY_DN45397_c0_g1_i12 1061 1080 AACCAACGAGCTAAAGTCGG BLAST psRNATarget
Ll_transcript_324441; TRINITY_DN45397_c0_g1_i10 1030 1049 AACCAACGAGCTAAAGTCGG BLAST psRNATarget
Ll_transcript_324434; TRINITY_DN45397_c0_g1_i4 1030 1049 AACCAACGAGCTAAAGTCGG BLAST psRNATarget
Ll_transcript_324438; TRINITY_DN45397_c0_g1_i7 1061 1080 AACCAACGAGCTAAAGTCGG BLAST psRNATarget
Ll_transcript_324440; TRINITY_DN45397_c0_g1_i9 1030 1049 AACCAACGAGCTAAAGTCGG BLAST psRNATarget
Ll_transcript_324435; TRINITY_DN45397_c0_g1_i5 1061 1080 AACCAACGAGCTAAAGTCGG BLAST psRNATarget
Ll_transcript_324439; TRINITY_DN45397_c0_g1_i8 1283 1302 AACCAACGAGCTAAAGTCGG BLAST psRNATarget
Ll_transcript_324432; TRINITY_DN45397_c0_g1_i2 1371 1390 AACCAACGAGCTAAAGTCGG BLAST psRNATarget
Ll_transcript_324431; TRINITY_DN45397_c0_g1_i1 1371 1390 AACCAACGAGCTAAAGTCGG BLAST psRNATarget
Ll_transcript_324444; TRINITY_DN45397_c0_g1_i13 1283 1302 AACCAACGAGCTAAAGTCGG BLAST psRNATarget
Ll_transcript_324442; TRINITY_DN45397_c0_g1_i11 1371 1390 AACCAACGAGCTAAAGTCGG BLAST psRNATarget
Ll_transcript_464633; TRINITY_DN52662_c2_g2_i1 1576 1596 GTCCAGTGGAGCTAAGGTTGT BLAST psRNATarget
Ll_transcript_464639; TRINITY_DN52662_c2_g2_i2 1576 1596 GTCCAGTGGAGCTAAGGTTGT BLAST psRNATarget
Ll_transcript_449632; TRINITY_DN50667_c0_g1_i1 527 547 GTTCAATCGAGCTAAGGTAGG BLAST psRNATarget
Ll_transcript_360682; TRINITY_DN47608_c6_g8_i1 156 176 GCCCCATTGAGTTTAGGTCGG BLAST psRNATarget
Ll_transcript_449642; TRINITY_DN50667_c0_g1_i3 875 895 GTTCAATCGAGCTAAGGTAGG BLAST psRNATarget
Ll_transcript_449641; TRINITY_DN50667_c0_g1_i2 527 547 GTTCAATCGAGCTAAGGTAGG BLAST psRNATarget
Ll_transcript_449654; TRINITY_DN50667_c0_g1_i10 527 547 GTTCAATCGAGCTAAGGTAGG BLAST psRNATarget
Ll_transcript_449646; TRINITY_DN50667_c0_g1_i6 875 895 GTTCAATCGAGCTAAGGTAGG BLAST psRNATarget
Ll_transcript_512732; TRINITY_DN46856_c6_g3_i3 996 1016 TTCAAACTGAGTTAAGGTTTG BLAST psRNATarget

Expression of miRNA 85


Labels

FPAB_1 abscising flower pedicels (replicate 1)      PAB_1 abscising pods (replicate 1)      PW2_1   pods wall stages 4-6 (replicate 1)
FPAB_2 abscising flower pedicels (replicate 2)      PAB_2 abscising pods (replicate 2)      PW2_2   pods wall stages 4-6 (replicate 2)
FPNAB_1   non-abscising flower pedicels (replicate 1)        PNAB_1   non-abscising pods (replicate 1)        PW3_1   pods wall stages 7-8 (replicate 1)
FPNAB_2   non-abscising flower pedicels (replicate 2)        PNAB_2   non-abscising pods (replicate 2)        PW3_2   pods wall stages 7-8 (replicate 2)
LF1_1 lower flowers stage 1 (replicate 1)      PS1_1 seeds stages 1-3 (replicate 1)      UF1_1 upper flowers stage 1 (replicate 1)
LF1_2 lower flowers stage 1 (replicate 2)      PS1_2 seeds stages 1-3 (replicate 2)      UF1_2 upper flowers stage 1 (replicate 2)
LF2_1 lower flowers stage 2 (replicate 1)      PS2_1 seeds stages 4-6 (replicate 1)      UF2_1 upper flowers stage 2 (replicate 1)
LF2_2 lower flowers stage 2 (replicate 2)      PS2_2 seeds stages 4-6 (replicate 2)      UF2_2 upper flowers stage 2 (replicate 2)
LF3_1 lower flowers stage 3 (replicate 1)      PS3_1 seeds stages 7-8 (replicate 1)      UF3_1 upper flowers stage 3 (replicate 1)
LF3_2 lower flowers stage 3 (replicate 2)      PS3_2   seeds stages 7-8 (replicate 2)        UF3_2 upper flowers stage 3 (replicate 2)
LF4_1 lower flowers stage 4 (replicate 1)      PW1_1   pods wall stages 1-3 (replicate 1)        UF4_1 upper flowers stage 4 (replicate 1)
LF4_2 lower flowers stage 4 (replicate 2)      PW1_2   pods wall stages 1-3 (replicate 2)        UF4_2 upper flowers stage 4 (replicate 2)