miRNA 99 details

Id Micro99
SequenceCGCTATCCATCCTGAGTTTC 
Annotated namesgma-miR390a-3p; gma-miR390c; mes-miR390; 
Annotated pre-miRNANone

Targets of miRNA 99

LuluDB transcript

ID Trinity

Target start position

Target end position

Target sequence

BLAST target sequence

Annotation method

Target details
Ll_transcript_78347; FTRINITY_DN85751_c0_g1_i1 173 192 CAGACTTAGGATGGATAGCT BLAST psRNATarget
Ll_transcript_45453; FTRINITY_DN46265_c0_g1_i1 4 23 AAAGCTCAGGAGGGATAGCG BLAST psRNATarget
Ll_transcript_45168; FTRINITY_DN54182_c6_g1_i1 89 108 TAAGCTCAGGAGGGATAGCG BLAST psRNATarget
Ll_transcript_43886; FTRINITY_DN54151_c4_g1_i1 119 138 TAAGCTCAGGAGGGATAGCG BLAST psRNATarget
Ll_transcript_14763; FTRINITY_DN59268_c0_g1_i1 148 167 AAGGCTCAGGATGGATTGTG BLAST psRNATarget
Ll_transcript_107859; FTRINITY_DN86009_c0_g1_i1 107 126 GGAACTCAGGGTGAATGGTG BLAST psRNATarget
Ll_transcript_178121; FTRINITY_DN58607_c5_g9_i2 590 609 GAAATTAAGGATGGATGGAG BLAST psRNATarget
Ll_transcript_162954; FTRINITY_DN53219_c1_g1_i3 133 152 TCAGTTCAGGATGGGTGGTG BLAST psRNATarget
Ll_transcript_162952; FTRINITY_DN53219_c1_g1_i1 861 880 TCAGTTCAGGATGGGTGGTG BLAST psRNATarget
Ll_transcript_229888; FTRINITY_DN61821_c0_g1_i1 244 263 AAAATTTAGAGTGGATAGTG BLAST psRNATarget
Ll_transcript_11172; FTRINITY_DN56894_c1_g2_i8 1 20 CAAACTTAGGATTGATAGAG BLAST psRNATarget
Ll_transcript_106819; FTRINITY_DN52969_c4_g1_i14 239 258 CAGATTCAAGGTGGATAGTG BLAST psRNATarget
Ll_transcript_106818; FTRINITY_DN52969_c4_g1_i13 239 258 CAGATTCAAGGTGGATAGTG BLAST psRNATarget
Ll_transcript_106816; FTRINITY_DN52969_c4_g1_i12 239 258 CAGATTCAAGGTGGATAGTG BLAST psRNATarget
Ll_transcript_11178; FTRINITY_DN56894_c1_g2_i12 1 20 CAAACTTAGGATTGATAGAG BLAST psRNATarget
Ll_transcript_106805; FTRINITY_DN52969_c4_g1_i2 239 258 CAGATTCAAGGTGGATAGTG BLAST psRNATarget
Ll_transcript_106804; FTRINITY_DN52969_c4_g1_i1 239 258 CAGATTCAAGGTGGATAGTG BLAST psRNATarget
Ll_transcript_69892; FTRINITY_DN22825_c0_g2_i1 174 193 TGAACATAGGATTGATAGCG BLAST psRNATarget
Ll_transcript_225367; FTRINITY_DN56198_c0_g1_i15 278 297 AAAAGTCAGCATGGATGGTG BLAST psRNATarget
Ll_transcript_162956; FTRINITY_DN53219_c1_g1_i5 730 749 CACGTTCAGGATGGGTGGTG BLAST psRNATarget
Ll_transcript_106136; FTRINITY_DN52977_c4_g1_i12 1021 1040 CAAAGTCAGCATGGATGGTG BLAST psRNATarget
Ll_transcript_225379; FTRINITY_DN56198_c0_g1_i27 876 895 AAAAGTCAGCATGGATGGTG BLAST psRNATarget
Ll_transcript_225365; FTRINITY_DN56198_c0_g1_i13 794 813 AAAAATCAGCATGGATGGTG BLAST psRNATarget
Ll_transcript_106128; FTRINITY_DN52977_c4_g1_i6 937 956 CAAAGTCAGCATGGATGGTG BLAST psRNATarget
Ll_transcript_225366; FTRINITY_DN56198_c0_g1_i14 794 813 AAAAATCAGCATGGATGGTG BLAST psRNATarget
Ll_transcript_106129; FTRINITY_DN52977_c4_g1_i7 937 956 CAAAGTCAGCATGGATGGTG BLAST psRNATarget
Ll_transcript_106135; FTRINITY_DN52977_c4_g1_i11 1086 1105 CAAAGTCAGCATGGATGGTG BLAST psRNATarget
Ll_transcript_225361; FTRINITY_DN56198_c0_g1_i9 794 813 AAAAATCAGCATGGATGGTG BLAST psRNATarget
Ll_transcript_225376; FTRINITY_DN56198_c0_g1_i24 1355 1374 AAAAATCAGCATGGATGGTG BLAST psRNATarget
Ll_transcript_334964; TRINITY_DN74460_c0_g1_i1 143 162 CAGACTTAGGATGGATAGCT BLAST psRNATarget
Ll_transcript_366924; TRINITY_DN46364_c1_g1_i2 115 134 TAAGCTCAGGAGGGATAGCG BLAST psRNATarget
Ll_transcript_282897; TRINITY_DN46151_c3_g5_i1 107 126 TAAGCTCAGGAGGGATAGCG BLAST psRNATarget
Ll_transcript_462527; TRINITY_DN75526_c0_g1_i1 113 132 AAGGCTCAGGATGGATTGTG BLAST psRNATarget
Ll_transcript_428103; TRINITY_DN39232_c0_g1_i1 242 261 AAAATTTAGAGTGGATAGTG BLAST psRNATarget
Ll_transcript_441775; TRINITY_DN47827_c0_g1_i10 656 675 TCAGTTCAGGATGGGTGGTG BLAST psRNATarget
Ll_transcript_503203; TRINITY_DN36055_c0_g1_i1 30 49 CAAACTTAGGATTGATAGAG BLAST psRNATarget
Ll_transcript_434343; TRINITY_DN46647_c0_g2_i3 240 259 CAGATTCAAGGTGGATAGTG BLAST psRNATarget
Ll_transcript_434348; TRINITY_DN46647_c0_g2_i5 240 259 CAGATTCAAGGTGGATAGTG BLAST psRNATarget
Ll_transcript_434339; TRINITY_DN46647_c0_g2_i2 240 259 CAGATTCAAGGTGGATAGTG BLAST psRNATarget
Ll_transcript_451220; TRINITY_DN50630_c3_g2_i4 277 296 TAAACTGAAGATGGATGGTG BLAST psRNATarget
Ll_transcript_451223; TRINITY_DN50630_c3_g2_i5 277 296 TAAACTGAAGATGGATGGTG BLAST psRNATarget
Ll_transcript_451261; TRINITY_DN50630_c3_g2_i14 700 719 TAAACTGAAGATGGATGGTG BLAST psRNATarget
Ll_transcript_420870; TRINITY_DN48773_c1_g3_i3 805 824 AAAAATCAGCATGGATGGTG BLAST psRNATarget
Ll_transcript_420860; TRINITY_DN48773_c1_g2_i4 884 903 AAAAGTCAGCATGGATGGTG BLAST psRNATarget
Ll_transcript_420861; TRINITY_DN48773_c1_g3_i2 805 824 AAAAATCAGCATGGATGGTG BLAST psRNATarget
Ll_transcript_420874; TRINITY_DN48773_c1_g3_i7 1366 1385 AAAAATCAGCATGGATGGTG BLAST psRNATarget
Ll_transcript_451217; TRINITY_DN50630_c3_g2_i1 277 296 TAAACTGAAGATGGATGGTG BLAST psRNATarget
Ll_transcript_420857; TRINITY_DN48773_c1_g2_i3 884 903 AAAAGTCAGCATGGATGGTG BLAST psRNATarget
Ll_transcript_302364; TRINITY_DN48227_c0_g2_i14 1431 1450 CAAAGTCAGCATGGATGGTG BLAST psRNATarget
Ll_transcript_451229; TRINITY_DN50630_c3_g2_i7 277 296 TAAACTGAAGATGGATGGTG BLAST psRNATarget
Ll_transcript_302366; TRINITY_DN48227_c0_g2_i15 1442 1461 CAAAGTCAGCATGGATGGTG BLAST psRNATarget

Expression of miRNA 99


Labels

FPAB_1 abscising flower pedicels (replicate 1)      PAB_1 abscising pods (replicate 1)      PW2_1   pods wall stages 4-6 (replicate 1)
FPAB_2 abscising flower pedicels (replicate 2)      PAB_2 abscising pods (replicate 2)      PW2_2   pods wall stages 4-6 (replicate 2)
FPNAB_1   non-abscising flower pedicels (replicate 1)        PNAB_1   non-abscising pods (replicate 1)        PW3_1   pods wall stages 7-8 (replicate 1)
FPNAB_2   non-abscising flower pedicels (replicate 2)        PNAB_2   non-abscising pods (replicate 2)        PW3_2   pods wall stages 7-8 (replicate 2)
LF1_1 lower flowers stage 1 (replicate 1)      PS1_1 seeds stages 1-3 (replicate 1)      UF1_1 upper flowers stage 1 (replicate 1)
LF1_2 lower flowers stage 1 (replicate 2)      PS1_2 seeds stages 1-3 (replicate 2)      UF1_2 upper flowers stage 1 (replicate 2)
LF2_1 lower flowers stage 2 (replicate 1)      PS2_1 seeds stages 4-6 (replicate 1)      UF2_1 upper flowers stage 2 (replicate 1)
LF2_2 lower flowers stage 2 (replicate 2)      PS2_2 seeds stages 4-6 (replicate 2)      UF2_2 upper flowers stage 2 (replicate 2)
LF3_1 lower flowers stage 3 (replicate 1)      PS3_1 seeds stages 7-8 (replicate 1)      UF3_1 upper flowers stage 3 (replicate 1)
LF3_2 lower flowers stage 3 (replicate 2)      PS3_2   seeds stages 7-8 (replicate 2)        UF3_2 upper flowers stage 3 (replicate 2)
LF4_1 lower flowers stage 4 (replicate 1)      PW1_1   pods wall stages 1-3 (replicate 1)        UF4_1 upper flowers stage 4 (replicate 1)
LF4_2 lower flowers stage 4 (replicate 2)      PW1_2   pods wall stages 1-3 (replicate 2)        UF4_2 upper flowers stage 4 (replicate 2)