| Id Trinity | FTRINITY_DN11196_c0_g1_i1 |
|---|---|
| Name Transcript | Ll_transcript_198617 |
| Sequence | AACAGGTATGCTACCAATTTGTTTTGGAGAATGTTCAAAATTTTCTCATTATTTAATGGAATCTAATAAAAAATATCATGTTATTGCTAAATTAGGGGAA AAAACATCTACATCTGATTCTGATGGAATTATCATAAAAAAACGCCCTATTTTAATTAATTCTTTTAAAATAAAATCTGCTCTCAAGGAGTTAACTGGTT TGATTGAACAAATTCCTCCAATGTATTCTGCAATCAAACATAATGGTGTGCCCTTGTATAAATATGCACGTCAAGGATTAAATATTAAGCGTAGTATAAG AAAAGTTCTTATACATGATATAAGTTCTATTCATCAAGAAAAAAACTTAATCGAATTTAAAATATTTTGTT BLAST |
| Tissue | flowers |
| Gene name | LI_gene_281; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_198617
| Blastp | tRNA pseudouridine synthase B from Buchnera with 100% of identity |
|---|---|
| Blastx | tRNA pseudouridine synthase B from Buchnera with 100% of identity |
| Eggnog | Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs (By similarity)(COG0130) |
| Kegg | Link to kegg annotations (BU375) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_004489195.1) |
| Pfam | TruB family pseudouridylate synthase (N terminal domain) (PF01509.17) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |