| Id Trinity | FTRINITY_DN24596_c0_g1_i2 |
|---|---|
| Name Transcript | Ll_transcript_197902 |
| Sequence | TAAAACTTAAAAGTTTAGTTTATGAGTTATACTAATATGAAGAAATATTAATTAGCAAAGAAAGGAAGGTGAATTCAGCAAAGACAAAGATGGCATCGGT GTTACCATACAGTGATGTTGATTCCACGTTGAGGGCAATGGCCGGTCGCGCCGAGGGTTTCGGCTACCTCGCCATCGGTGGCCTCCACGGTCCTGTCTAT TCCGTCACCACCCTTTCAGATGATGGTCCTGGGTCTCTTCGCGAAGGATGTCGTAGAAAGGAGCCTCTATGGATTGTTTTTGCAGTTTCAGGCACAATTC ATCTTTCATCATATCTGAGTGTGTCATCTTATAAGACCATAGATGGCAGAGGCCAGAGGATAAAATTGACTGGAAAAGGCTTGAGGCTGAAAGAATGTGA GCACATAATTATCTGCAACCTTGAGTTTGAGGGTGGTAGGGGTCATGATGTGGATGGCATTCAAATAAAACCAAATTCTAGGCACATATGGATAGATCGA TGCAGCCTTCGTGATTATGATGATGGGCTGATAGACATTACAAGGCAAAGCACGGATATTACAGTATCTAGGTGTTACTTTGCAGAGCATGACAAGACCA TGCTGATTGGAGCTGATCCATCTCATGTTGGTGATAGATGCATCCGGGTGACTATTCATCATTGTTTCTTTGATGGAACACGGCAAAGACAACCTCGTGT GAGGTTTGGAAAAGTTCATCTATACAACAATTACACCAGAAACTGGGGAATATATGCTGTTTGTGCTAGTGTTGAGTCACAGATATACTCTCAATGCAAC ATATATGAAGCAGGAACTAAGAAAAAGACTTTTGAATTTTACACGGAGAAGGTAAAATAATTTTCTCGTCACTTCATGTTTGCTGCCTGTTTTATCATCA TTGATCAGGGACCTTCATGGCCTATCGCATGACCATATTCACTATATTTTAACTCATTCCTCATTTCTGCACTCACATATAACCCAAGAAAGGGATGTTG TTAAATATCCATTATTCAACCCTTTTTGGTATGAGTTTTTGTCACATGAATATTTTTCTTGGTTCTACTTTTGAAGCTTGGATATGTAATTAATTGGATA TGCTTCTTGAATTAGACAATTTCGTAATATTGTTTTGGCATATGCTTTGTTGTTTAGTATGACCTTTTTCTCAAATTATGTCCATAAATACCTTTAATCT TAGTTGAACCTTCGGCTCACTCATCGTTGTGACCTGGATTCAATTCTCCTACCAAAAATCCTTATTGAGGTTCATGGTCATGGCATCTTTCTCAAATCAA AACTTTTATCTACCAAATTATTATGTGAATAAATAATTAGTATTTTACTCTTTGCTCCAACCATATTGGACAACACTTTACACCCCAGATATCTACTAAT TAATGGTTGCGATAAAAATGGTTCCCTAGGCTGCAGATAAGGAAGAGCACAAATCTGGCTTTATAATATCTGAAGGAGACATGTTCCTGAATGGTGCTCA ACCTTGCTCGCCAATGGAATACAAGGAAGAATCCATGTTCCATCCTAGTGAATATTACCCAACATGGACATTGGAAACAGCTGCAGATTCTTTCAGGGAA ATCCTCCAATTATGTACAGGTTGGCAATCCATTTCGACGCCGGTAGACCATATTGAATAAGATTCATTGTAATTGCAGGAACACATGTGGTTTATGTGTC ACCATCTACAATACATTAACCAGAATTCAGAGACAATGCTTAACTTGTCACTCTTTTAATCCTACTAGTATTATCATCTTTATTGTATTCTTCAATAAAG GAATATTTATCTGAACTTTGGACTCATCTATGAATATATGCCTTCTTTTGTTATTTCCTTTCGACAATTACATTTAGGTGGTGGCCAAGCAAGACGATTA TAATATGTTTCCTATGTCAAATCTATGAATATGTGCCTTTTTG BLAST |
| Tissue | flowers |
| Gene name | LI_gene_4186; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_197902
| Blastp | Probable pectate lyase 4 from Arabidopsis with 41.98% of identity |
|---|---|
| Blastx | Probable pectate lyase 4 from Arabidopsis with 42.62% of identity |
| Eggnog | pectate lyase activity(COG3866) |
| Kegg | Link to kegg annotations (AT1G30350) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019451142.1) |
| Pfam | Pectate lyase (PF00544.18) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |