Ll_transcript_176545

• Id Trinity: FTRINITY_DN25112_c0_g1_i1
• Name Transcript: Ll_transcript_176545
• Sequence: AAAAAACATAGCCATGACATAAGAATGATCTAAAGTCTAAACCTCTACTCCAAAGTCCTACGCATCATGGCAACTCTCCGCCACCGCATTGTTACTCTCA CTCACCGCTTATCATCCTCCGCCGCCACAACCACCACCACCACCGCTCCTTTCTCCTCCTCCTCCACCTCAAAAATCCCACTCCTCTACCCCTTCACCAA CAACACTACAACCACAAACCCCACCGACCAACCCGACACCGTAACCCTCCAGCTCTTCTCCTGGGGCAGAGGCGCCTCCGGCCAACTCGGCGGCGGCATC GAAGAAATCCGCATGTACCCTTCTCCCGTCGCCAATCTCATCGTTCCCAAGTCTTCCTTTTCCCTCTCCGAAACCCCGGGAAATCTCGGAGTCTCAAAAA TGATGAAGAAGAAGGAGAATAAGAACGTGGAAATTGGAATTTCATGTGGGCTTTTTCATTCTTCGTTGATTGTTGATGGGTTACTTTGGATTTGGGGTAA AGGTGATGGTGGAAGACTTGGTTTTGGGCATGAGAATTCGTTGTTTGTTCCTACTTTTAATCCTCATTTGGAAGATGTTCGTTCTGTTGCTCTTGGTGGT TTGCATTCGGTTGCGTTAACCTCGGCCGGAGAAGTTTTTACATGGGGTTATGGTGGTTTTGGTGCTCTAGGACATGCGGTTTATCATAGAGAACTATTTC CTAGGTTGGTAAAAGGCTCCTGGGATGGAATTATCAAACATATTGCTACAAGTGGAACACATACTGCAGCAGTCACAGAATCAGGGGAGCTTTATATCTG GGGTCGGGACGAAGGAGATGGTCGATTGGGTCTAGGTCCTGGTCGGGGCCCGGATCATGCTGGTGGACTTAGTATCCCTTGCAAAGTAAAAGAACTACCT TTACCTATCGCTGCCGTTTCTTGTGGGGGATTTTTCACAATGGCATTGACAAAAGATGGACAACTGTGGAATTGGGGAGCCAATTCTAATTATGAACTTG GGAGAGGTGATAAGATTGGTGGTTGGAAACCAAAACCAATACCCAGCCTTGAGAATGTTCGAATCATTCAAGTAGCAAGTGGGGGATACCACTCCCTTGC ATTAACTGATGATGGTAAAGTGCTTTCATGGGGCCATGGTGGACAAGGTCAGTTGGGTCATGGATCTATCAATAACCAGAAGATACCAACAGTAGTTGAG GCTTTAACTCATGAGGATATTGTATATATTTCCTGTGGGGGTTCTTCATCATCAGCTTTGACAGATACAGGAAAGTTGTATGTGTGGGGAAATGCTACTG ATTCTCAATTGGGAGTTCCTGGGTTACCAGCAGTGCAATCAAGCCCCGTCGAAGTTAACTTCTTGATGGAAGATGATGGATTGGGACCCCACAAGGTTTT AGCAGTTGCAAATGGTGCATCACATGGCATGTGTTTAAGTTTGAGGGAAAGTTGTTGATTATGTCTTTTGACATGAAAATTTCATGTGGGTCTTAAACAA GGTAAATTTCACAGGGAATGCTAAAAAAAGCTTTTCTTTATGTAGAATAGGATATCATATCATGAATATAATGGTCAATACAGATGATTGTTTCCATGAT CCAAAGATCTCATCATCAGTGCTCCGGCCGAGGCCGAGGATTCCTTTTCATCTTGTATTTGATGTACCAGTAGTTTACATTTGTTTGAAGTTTTGAAGTA CTGAATGATCAAGGTTTAGAACAATTTCATCCTTTTTTGAACATTGTGGTTAATGCTGATAGCATGGTAGAATCAATGCTTTGATTTGAAGGTTATTGTT ATAGAGAAACCATCTTAGGCCAAACTTTTTAACAATTTATATCGTTGTAAACTTTTAATTGATGCCAGATGAAGACCAACTTGCATTTTAGGGTCATCAC TTGCATTTGTTAAATTGTTGAGGAAGGTGATATTAGAAGAATAAAAGATTATTTGAATTGCAGTGCCTATGACTCATGAATATGCTACTTGTTGGGTTAT AAGTGTAGATCTTTT
• Tissue: flowers
• Gene name: LI_gene_4462;
• Additional information: details;

Expression of Ll_transcript_176545

FPKM

• FPAB: 2.5
• FPNAB: 4.7
• LF1: 3.1
• LF2: 2.8
• LF3: 2.6
• LF4: 3.1
• UF1: 3.3
• UF2: 3
• UF3: 3.5
• UF4: 3.8

Labels

• FPAB: abscising flower pedicels
• FPNAB   : non-abscising flower pedicels
• LF1: lower flowers stage 1
• LF2: lower flowers stage 2
• LF3: lower flowers stage 3
• LF4: lower flowers stage 4
• UF1: upper flowers stage 1
• UF2: upper flowers stage 2
• UF3: upper flowers stage 3
• UF4: upper flowers stage 4

Annotations of Ll_transcript_176545

• Blastp: Probable E3 ubiquitin-protein ligase HERC1 from Homo with 34.81% of identity
• Blastx: Probable E3 ubiquitin-protein ligase HERC1 from Homo with 32.59% of identity
• Eggnog: ubiquitin protein ligase(COG5021)
• Kegg: Link to kegg annotations (8925)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019450051.1)
• Pfam: Regulator of chromosome condensation (RCC1) repeat (PF00415.17)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;