Ll_transcript_198579

• Id Trinity: FTRINITY_DN41692_c0_g1_i2
• Name Transcript: Ll_transcript_198579
• Sequence: GTTTGTCCCATTTCCTAGAGCTTTCCTAGTTAGTATTTTCTAAACAAGTCATCATCTTATCCCTCATATAAGTTGATGTCAGCTTTGGATGGAAAAGACC AACATCATTCATTCAATTCAACATCATCCATTCAATTCTGCTCAACTTTCATCCTTATTTCTCATCTGGGAGCAATATACAATATAACATGGCTGGTATA GCAACTGCAGAGATTTGTGACACAAATGTAACACATATAACAAATGGAGATCTGAGGGTGCTGCATCCAGATTTCAACATTTATGGTCAGTCAAGGGCAT TCTCAGGGCCCATTGTGACATTAAAGGTGTTTGAAGACAATGTGTTAGTTAGGGAAGTTCTTGAAACAGAAGGAGAAGGAAGAGTTTTGGTGATTGATGG AGGAGGAAGCAAGAGGTGTGCCTTGTTGGGAGGGAATTTGGGGCAGTTAGCCCATAGCAAGGGTTGGTGTGGGATTGTGGTGAATGGGTGCATTAGAGAT GTGGATGAGATCAATGAATGTGGCATTGGTGTGAGGGCATTGGCTTCTCATCCACTTAAGTCAAATAAAAAGGGCAATGGTGAAAAGCATGTTCCTGTTT ATGTTGGTGGAACATTGATTCGTGATGGAGAATGGTTATATGCAGATAATGATGGTATCCTTGTATCAAAATTTGAGTTGTCAATTTGAACTAGTACTAT TGTAATGAATAAAGTTCTTCTAATCAATTGGATGTTTTGACAGCTTTAAAGTCATCATCTTTTGTTGAGTTGTGGTGACTATACCCCATCACAAAATTGC TATATTTATTTCCAATGTTCTTTCTTGGGTTTGCTTATCCATGGCAATCTATCAGTTGTAGTTTGATATAGTGCCCCCAAGAAATAGGTTCTTCGAGAAC AAGAGCCATTTAAGAAAGACGATTCCCGGAGAAGTCAAAATTAGTCTTTGGATAGTGGCAACTGGCAACATGAAATGCAGAAGCAAAGTGAAGGATGCAT GGAATGGTAAGAGAGGAGCTGAAATGGATAAAGAAATTGCATGGAACTAGCCAAAACAGAGTATTACTGTATTAGAGAGTGCAACACAAGTGTAGTATTC GAAGAACTTGATGAAATAGAGATGAAATTCAAACAGAGGCTACAAAAATACATGCACGACAAAGGAGATAGGAATCGACAACCATTTTGTGCAAGGAAGA AGAAGAAGAAGAACCAGATGCTGAGGAATATAGCATCATGGCCAGTTTTACCAGCAATTATATACTTCCACAAAATCTAAGATGATAACTAACAATAGAC CACAAGTGCATACATAGAAGCAAAAAAGAAAC
• Tissue: flowers
• Gene name: LI_gene_9808;
• Additional information: details;

Expression of Ll_transcript_198579

FPKM

• FPAB: 8.8
• FPNAB: 2.9
• LF1: 3.1
• LF2: 1.6
• LF3: 5.7
• LF4: 7.8
• UF1: 2.5
• UF2: 2.5
• UF3: 6.5
• UF4: 10.2

Labels

• FPAB: abscising flower pedicels
• FPNAB   : non-abscising flower pedicels
• LF1: lower flowers stage 1
• LF2: lower flowers stage 2
• LF3: lower flowers stage 3
• LF4: lower flowers stage 4
• UF1: upper flowers stage 1
• UF2: upper flowers stage 2
• UF3: upper flowers stage 3
• UF4: upper flowers stage 4

Annotations of Ll_transcript_198579

• Blastp: Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3 from Arabidopsis with 77.11% of identity
• Blastx: Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3 from Arabidopsis with 77.11% of identity
• Eggnog: Globally modulates RNA abundance by binding to RNase E (Rne) and regulating its endonucleolytic activity. Can modulate Rne action in a substrate-dependent manner by altering the composition of the degradosome. Modulates RNA-binding and helicase activities of the degradosome (By similarity)(COG0684)
• Kegg: Link to kegg annotations (AT5G56260)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019423183.1)
• Pfam: Aldolase/RraA (PF03737.14)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;