| Id Trinity | FTRINITY_DN42126_c0_g1_i1 |
|---|---|
| Name Transcript | Ll_transcript_247432 |
| Sequence | CGTTAGAGTAGTTGTACCCTATCACTCTTCTCCAATGATGATTCTTACTCGTTCTTCTGCTTCCTTTCTTCAAAACCCACAAATTCGTTTCTTCAACCAT TCTCTTCTCAATCCTACTTCACCTTCTTCTCTTTTCAAATCACTTTCCTTCTTTTCTCTCTCCATAACTCAAACCAGAACAAATTTTTCAACCACACCCA ACAACGTTGTTCCAACATCACAAGATTCAAATGGAAAAGACACTTTCTTTGCTGAAGAATCTGTTTTTTGGAACTCACTTGGTCTTTCTGATACTATTTC TCGTTCCCTCTCTAACATTGGTCTCAATAGACCCTCCCTCGTTCAGGCTTCTTCTGTACCAGCTGTGCTGTCAGGGAAGGATGTGATAATTGCGGCCGAG ACTGGCAGTGGCAAAACATACAGTTACCTAGTTCCTCTAATTGATAAACTACTGGGTACCCATGAAAGTTCTCTACAAACTGTATCTGATCAAGAAGTGT CCTCAACCCGTAAAGTTCTGCTCGTTCTTTGTCCAAATGTACAACTATGTGAGCAGGTAGTTAGGATGGCTAGCAGTCTCTGTGGTGACAACGGTGAACC GATTGTTAGTGTGGCAGCCATTTGTGGTAGACAGGGATGGCCACACCGTGAACCTGATATCATTGTCACGACACCTGCTGCTCTTCTTAATTATGTTGAC ACTGATAGAGACCGTCGCTTGGAATTTATGCATGGTGTTAAATATGTGGTTTTTGATGAAGCTGATATGCTTCTCTGTGGGAGCTTCCAGAATAAAGTAA TCCGCCTGATAAACTTGCTGCGCTTTGATGAAAAACTCGTGTCTCAAGCAAAAGAATCAGCAGCAGAGTTGCCACAGGAACTAGAATCTTCCTTGTCATC CCATGATGCTTTGGAAGTTGAAGAGGAAATTGAAAATGAAGCCATCTCAGAAGAGGATGATGATGATGACAATGAGGAAATTCCTGATATTAATAATGAA GTTGAATCTGTTAAACGAAGAGACTGGAGGAGAGTGAGGAAAACTTATGAGCGTAGTAAACAGTATATTTTTGTTGCAGCTACACTTCCAGTGAATGGAA AGAAAACAGCCGGAGGAATATTGAAACATATGTTTCCCGATGCTAAGTGGGTTAGTGGAAACTACCTTCACTGTCACAATCCAAGATTGGAGCAAAGATG GATTGAAGTTACAGTTGATACACAGGTGGATGAACTTATAAGGGCCGTGAAGTGGGGTTTCAGAGCTGAAGATTTGGACTCTGCTGGTGGCATTCACAGA ACAATGGTGTTTGCCAACACTGTTGAGGCTGTTGAAGCTGTGGCGAAGCTATTGCACCACTCTGGGATTGAATGTTTACGTTATCATAAGGGTTGCACAT TGGAGGAGCGAGCACAGACCTTAGTTGACTTCCACGAGAAAGGTGGTGTTCTTGTGTGTACTGATGCAGCTGCTCGTGGTGTTGATGTTCCAAATGTCTT GCATGTTGTTCAGGCAGATTTTGCTACTTGTGCTGTAGACTTTTTGCATAGGGTTGGTCGTACAGCTAGAGCTGGTCAATTTGGAGTTGTTACTAGCATG TATACTGAATCCAACAGGGATCTTGTTGATGCAGTTCGTCGTGCCGGGAAACTTGGTCAACCCGTGGAGACCGCATTTAGCCGGAAAAGGGGCTTCCGGA ACAAGCTAAAAAAGAGAGCTGCTGCAAACAAGGTCAGAGATTCAGCAACTATTGAAGAATATTCTAGCATAAGAGTATGAGGTTATGCCAAATTGAAAAG CACCACCAAATGACAGAGTGAACAACATTATCACACTTACATGCCTCAAATGTCACAAATGCAGCACCAATGGAAAAGTCATATGTGTTTGTCAAATGGT TAAATATCCAAAGGGTAATGTGTTCATTATTTTCTGTATATGTATGCTAATAAAGTTGATGATAGTGGGACAAATTTTCAGATAGTTATTATACTTGGTT GTTAATTTGTTATACTTATAATTACCATGTAAATTTTATTTTCCCTATCATATTTTTTTGTTAGTTATATTTTAACAGATAATTTTGAAGCAACAAAATC TACCAAAGATTATACATGTATTATATGCATGACCATATATTGTTAGTGGTAGTAGTGGGTTTAATCATT BLAST |
| Tissue | flowers |
| Gene name | LI_gene_10187; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_247432
| Blastp | DEAD-box ATP-dependent RNA helicase 22 from Arabidopsis with 60.12% of identity |
|---|---|
| Blastx | DEAD-box ATP-dependent RNA helicase 22 from Oryza sativa with 57.91% of identity |
| Eggnog | ATP-dependent RNA helicase involved in mRNA splicing. May destabilize the U1 5'-splice site duplex to permit an effective competition for the 5'-splice site by the U6 snRNA, resulting in the switch between U1 and U6 at the 5'-splice site. May also act to unwind the U4 U6 base-pairing interaction in the U4 U6 U5 snRNP, facilitating the first covalent step of splicing(ENOG410XNVG) |
| Kegg | Link to kegg annotations (AT1G59990) |
| CantataDB | Link to cantataDB annotations (CNT0001390) |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019439193.1) |
| Pfam | DEAD/DEAH box helicase (PF00270.28) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |