| Id Trinity | FTRINITY_DN42969_c0_g1_i1 |
|---|---|
| Name Transcript | Ll_transcript_66772 |
| Sequence | CATTCCTTATCATTCCAACTACCTTCTTCTCGCTTTCTCATCAGCATCGCATATTAGGGTTTTCGTTGTTCCACTTTCGAAATTTCATTCTTCAACTCAT TCTAAATCCAATTCCATTATTTTCTTCTATCCCTATTCACTCAACTTCAAAACAATGAACGACGACGTTTTCGATACCCACAAAATCCGAAACATGTGTA TCCTTGCACACGTGGATCACGGCAAAACCACCCTCGCCGACCACCTAATCGCCGCCGCAGGCGGCGCCTTACTCCACCCTAAACTCGCTGGGCGCGTGAG ATTCATGGATTACCTCGACGAAGAACAACGACGCGCCATAACGATGAAATCTTCCTCAATTTCCCTCCATTACAAGGATCACTCCATCAATCTCATCGAT TCCCCTGGCCACATGGACTTCTGCAGCGAAGTCTCCACCGCCGCGCGTCTCAGCGACGGCGCGTTAGTTTTAGTCGACGCCGTCGAAGGTATTCATATTC AAACCCACGCGGTTTTACGCCAGTGTTGGATTGAGAAACTATCCCCTTGCCTCGTGCTTAATAAAATTGACCGGTTAATTACCGAGCTTAAGTTAACTCC CTCGGAGGCCTACACGCGCTTATCGCGAATTGTTCACGAGGTGAACAACATCGTGAGCGCGTATAAGTCGGAGAAGTATTTATCCGACGTGGATTCCATT GTGGCTGCCGCCGGAGCCGGTGGTAGCGAGGATGAAGAGTTTGTGGAAGATGATAATGATGATGAGGAGGATACATTTCAGCCGCAGAAAGGTAATGTGG CGTTTGTTTGTGCTTTGGATGGTTGGGGGTTTAGGGTTCATGAATTTGCTGAGTTTTATGCTTCAAAGCTTGGTGCTAGTGTTAATGCCTTACAGAAAGC TTTGTGGGGCCCACGGTATTTTAATCCGAAGACGAAAATGATTGTTGGGAAGAAAGGGATTGCAGGTTTTGGTGCTGGTGGGAAGGTGGCTAAGCCTATG TTTGTACAGTTTGTGTTGGAGCCGCTTTGGCAGGTTTACCAGGGTGCATTAGAGGGGAAAGGCTTGGTTGAGAAAGTTGTTAAGGCATTTAATTTGTCGA TTCCGGCTAGGGAGCTTCAGAATAAGGATCCTAAGGTTGTGCTTCAGGCGATTATGAGTCGTTGGCTTCCTCTTTCAGATGCAGTTTTGTCTATGGTAGT GAAGTGTATGCCAGATCCCATTGCAGCGCAATCATTTCGTGTGTCTCGCCTGCTTCCAAAGCGAGAAGTTGTTAATGGGGTTGAGATTGAGATCGATCAG ACTGTGGTGGAAGAGGCAGAGCATGTGAGGAAATCAGTTGAGGTGTGTGATTTGAGACCTGATGCTCCTTGTGTTGCTTTTGTGTCGAAGATGTTTGCCA TTCCAGTTAAAATGCTTCCGCCATCGGAGAATGGTTATGGTGATGAAGGAGAGGGTGATTCAGATGAGTGTTTCCTGGCATTTGCTAGGGTCTTTAGCGG GGTTCTTAATGCAGGTCAAAGAGTTTTTGTGCTTTCTGCTTTGTATGACCCATTGAAAGGGGAATCGATGCAAAAGCATGTGCAGGAGGCTGAATTGAAA TCTTTGTATTTGATGATGGGACAAGGCTTGAAAGTAGTGAAATCTGCCAAAGCAGGAAATATCATTGCTATCCGAGGCCTTGGCCAGCATATATTGAAAA GTGCTACTCTTTGTTCTACTAGGAACTGTTGGCCTTTTTCGAGTATGGAATTCCAAGTTGCCCCGACTTTGAGAGTTGCAATTGAGCCTTCTGACCCTGC AGATGTGGGTGCACTGCTGAAAGGATTGAGGCTTCTGAATCGAGCTGATCCATTTGTTGAGGTTCATGTTTCTGCAAGAGGGGAGCATGTTCTTGCTGCA GCTGGGGAAGTGCATCTCGAAAGATGCATAAAGGATTTAAAGGATAGATTCGCGAAAGTAAACTTGGAAGTGTCACCGCCTCTTGTGTCGTATAAAGAGT CCATCGAAGGGGAGGTATCCAACATGCTGGAGAATTTGAAGGCTCTTCGTAAGAGCTCAGATTATGTTGAGAAAACAACACCCAACGGAAGATGTATAGT ACGAGTGCGTGTGATGAAACTTCCACTTTCTCTTACGAAAGTGCTACACGAAAGTTCTGATTTACTTGAAGATATCATTGGTTTAAAGTCTGGTCAGACA GTTAAAAGTTTGGAAATCCTGGGAATGAGTATTCTCAAAAATGATAATCCAACTGAAGTGCTAAAAAAGCGTGTAATAGATGCAGTGGACAGTGATATCA TGAGCAGGATTGAGAATGACAAGGACCATACTGACAAGGACCATACTGACAAATGTAAATTGCAGTGGCTAAAGCTTCTGAGGAGGATATGGGCACTTGG ACCTAGGCAGATTGGTCCCAACATTCTCTTTACTCCGGACATTAAAGCAGCAGAGTGTGGCGATGGATCTGTTCTAATACATGGTTCTTCTCACATAGCT GAAAGGTTAGGCTTTACGGCTGATTCTAATAGTGCTCACTCAGTCATTGAGACACCTTCAGACATGAGCCATGCTTTGTACACGGATGTTGAATATCTTG AGAGTAGTGTTGTATCTGGGTTTGAACTAGCTACTGCGGCTGGACCTTTATGTGATGAACCTATGTGGGGTTTGGCATTTGTTATTGAAGCTCGGATATT TCCGTTTACAGGGCAGTCTGATGAATCTGAAACACACCAACAATCTGAGCAGTATCGCATTTTGGCAGGGCAGGTAATTGCAACTGTCAAGGATGCCTGC AGAGCAGCCGTGCTTCAGAACAAGCCACGGCTTGTGGAAGCAATGTACTTTTGCGAATTGAATACCCCGACTGAATATTTAGGTCCCATGTATGCTGTAC TTTCCCGAAGACGAGCCAGGATTTTGAAGGAGGAGATGCAGGAAGGTTCTCCTTTCTTCACTGTTCATGCATACGTTCCTGTCTCTGAGAGCTTTGGTTT TGCGGATCAGCTTAGGAGAGGGACTTCTGGTGCTGCAAGTGCACTTCTTGTCTTTAGCCACTGGGAAGCACTTTCTGAGGATCCTTTCTTTGTACCTAAA ACAGAAGAGGAAATTGAAGAGTTTGGAGATGGTTCTAGTGTTCTGCCAAATACAGCAAGAAAGTTAATCGATGCAGTCAGACGGCGCAAGGGACTTCCCG TGGAGGAGAAAGTAGTACAGCATGGAACCAAACAGAGGACACGAGCTCGTAAAGTTTGACATTCATCATTAATTATTGTTTTGCCCTGGCTCTGAAGACA ACCTGTATTTGTTGAATGTATGTGTAGTTCATACTTCATAGGTCATACACTGTATCTTTAGGAACACTTTTTTTCCAGCATGAGTGTTTGTTGTAGTGCA TCACTGAAGTTTTGTGCCATTTTCCATTATATGTCTAAATATACCCTACAATTTTGCTACTCTAGTTTTTGCACAAAATAGCTTTTCAGCTAAATGCTCT CTATGTACTATGCAGAATTTTGAATATAAGCTTATCTGAATACAAAATTAGCTTATCTAAAGGT BLAST |
| Tissue | flowers |
| Gene name | LI_gene_10936; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_66772
| Blastp | Elongation factor-like GTPase 1 from Homo with 37.99% of identity |
|---|---|
| Blastx | Ribosome assembly protein 1 from Schizosaccharomyces with 37.43% of identity |
| Eggnog | Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome (By similarity)(COG0480) |
| Kegg | Link to kegg annotations (79631) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019415395.1) |
| Pfam | Elongation factor Tu GTP binding domain (PF00009.26) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |