| Id Trinity | FTRINITY_DN49217_c0_g1_i1 |
|---|---|
| Name Transcript | Ll_transcript_209394 |
| Sequence | GGTTAACGCGCTTCATGTCCATCTTTCTCTAGCACTGTGTCTCGGTTCAAGTGCGGATGGTTATTTTTTTATAAGTTTTTAACTATTTAGTTTTTAGGAA CACCGCCATGGCTTTATCTACAGCTCGGCCGTTAGTTTCTGTATACAGTGAAAAAAATGAAGAAACCGGAGAAACTGTTGCTCTTGCTACTGTGTTCAAA GCACCCATCAGACCGGATGTTGTTAGTTTCGTCCACGACAATGTTTCAAAAAACAGCAGACAACCTTATGCCGTCAGCAAACTAGCTGGTCATCAAACTA GTGCTGAATCATGGGGTACTGGTCGTGCCGTTGCTCGTATTCCTCGTGTCCGAGGTGGTGGTACTCACCGCAGTGGTCAAGGAGCTTTCGGTAACATGTG TCGTGGTGGACGAATGTTTGCCCCCACACGTGTATGGCGCCGTTGGCATAGAAAAATTAATGTTACACAAAAGCGTTATGCTACAGTATCAGCTATTGCC GCTTCTGGTGTACCTGCTCTTGTCATGTCAAAAGGTCATTTGGTACAAGAGGTACCTGAATTTCCATTAGTTGTTTCTGACAAGATCCAAGAATACACTA AAACCAAGCAAGCTACAATTTTCTTACACCGTATCAAAGCATGGAAAGATATCCAAAAGGTGATTAAGTCTCGCCGTTTACGTGCAGGTAAAGGAAAAAT GCGTAATCGTCGTCATGTTCAGCGTAGAGGTCCATTGATTGTTTACAGTAAAGATCAAGGTTTAAGGAAAGCTTTCCGTAACATCCCAGGTGTAGATTTG ATTAACATCAGGAAATTAAACTTGTTGCACTTGGCCCCTGGTGGTCATGTTGGACGTTTTATTATCTGGACACAATCTGCTTTCCAAAAGTTGGATGATC TTTATGGCACATGGGACAAAAAAGCAACTCTGAAGAGCGGCTACAATTTGCCTTTCCCCAAAATGTCAAATACTGATCTGACAAGGATTCTCAAATCTGA TGAACTCAAGAAATACTTGCCAGCTCAAAGGACTGGATCATTGCGCCGCACTCGTAAATTGAACCCATTGAGACATGTACGTACTATGCTCAGATTGAAT CCTTACATTGCAGTTCAAAAACGTGTTGCAAGCAATGAAAACAAATTAAGAACATTGGCTCGTGAAACTTACTTAGCCAAGAAAGAAGGGAGACCAACAA CTGAGAAGGGTGAAAAATTATTGAAACGTTTCATCAATGAAAA BLAST |
| Tissue | flowers |
| Gene name | LI_gene_18202; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_209394
| Blastp | 60S ribosomal protein L4 from Sophophora with 67.87% of identity |
|---|---|
| Blastx | 60S ribosomal protein L4 from Sophophora with 67.87% of identity |
| Eggnog | One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity)(COG0088) |
| Kegg | Link to kegg annotations (Dmel_CG5502) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_016166753.1) |
| Pfam | Ribosomal protein L4/L1 family (PF00573.21) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |