Id Trinity | FTRINITY_DN50191_c0_g1_i5 |
---|---|
Name Transcript | Ll_transcript_3474 |
Sequence | AAAAAATGGAAGGATGAAGAAGGTAACCTTCATGCTACTCTCTCTGTCTCTCTCTTTATTTGTATTGTATTTTTGTTATGCAATGTAATTGAGGAAATGC TTAGCTGTGTCTGTGTTTGGGTTTTGCTGCCAAATTCGAATTATTTCAATATTGTATTTCGAAACCCCACTGAGGACCTTGTAAGCTACGCAACTAACTT GTTTGAATTAAAAATAAGCTACCTATTGCTTTTTGTATAAGGGCTTATTTCAATAAGCTGTAAGCTACATGAGGTAGCTCATGACTTATAGGATAGGGGC TTATGTCATTTACACCTATCAGTTGGCTTTTCAGCCAATCATGCTAAACAGTTTTGATTCAACCAACTAGGTTATACCTACCTTCTAAGGTTTCAGGTAG GTTATAAAGCTTCCAGCTAGCTTATAAAGCTTTCAGATAGCTCAATAGTTTCCAGCAAACATGTATGCTTTCAACTACCTTATCAGCTAGTTGTGACAAT GGCAAACAGAACTGTTGTAATCAATTGTATATTGTATTCGAGTCAATTTTATGGTTAAATGGATTCTTTGAAAAGGGAATTTAAGTTAATCTATTTCATT TGTATTGTGTAAAAAATTCACTTTTATATACAAAGTCAGGTAGCTATGGGAAAATTTCACACAAGAGTCCAGTAAATAATTGAACAGAGAGAAGTTATGG GATAATAATTGAGTGGGTTGAAAATAAGCTATATTTGAAATCATAATGATGAAGCTTTGAGATGGAGAAGAAATAGTTTTTTAGTTTTTACCTCAAGAGT TTTTTTGCTGCCAAATTCACTAGTTTAATTATTAAACAATCCCCCCTCTTTCAAAACATCTAAAATCCATAGTAGACTAGTTATCCCAAACAAACACTCA GTGGTAAATGTGATTTTGAAGAGAGCACTAGATTATAGGATCACTGTTTTCCTTTTTATTTGTGAACATGTGATCTCACATGTCTGTGGCATGAAAGTGC TACATTTGTATGAATTTTGTTCAAGTTTATTTCGTTGTAGTTTGTTTTAAGGTCTTTATTTTTATAAAGTATATGAAGTATGAACATTTCCTTTTGAATT GTTGCAGGGCCTGGCGAAAGTTATTAGGTTTCACCCAAAGGTCCCAGGAGTTTGGATTTATGCTGCAGCTTGGGAATTTGATCACAACTTAAATGTTACA GCTGCTCGTGCTTTAATGCAGGAAGGTCTCAGGGTTTGCCCAACTTCTGAAGAGCTTTGGGTAGAGTACCTTCGGATGGAACTTACATACATTAACAAGT TAAAGGCCCGGAAGGTTGCCTTAGGTGAGGATGAGGGAACTCTGACCCGCGATCCTAAAACTGCGGTTGAAAAACAGTGGAGAGATGAAAACAAAGAGTT ATTTAGGCCCCTCGGTGAAAAAGCCAGTAATGATGGACCCGATGTTGAAAGTGAAGAACCAAACAAGAAAAAGGAATTGTTTGAAGAGCATGGTATGAAC ATTTTTCGAACTGTCTATGGTGCAGCTGTTGAAGCAATTCCTTTGAGTCTTAGTCTTAGGAAGTGTTTTTTTGAAATATTGGAGGGTACCAACTTAGCAC ATTTTGAAGATGTGCGTAAGGAGATATTGGGTGACATGAAGAGGGATTTTTCAACAGAACCAGAATTTTGGGACTGGCTAGCAAGACACGAATGTGATCT TGAAAATGTGCCGGTGGACATAAGTGAGGAAGTCATAACTTCCAAGGTGGATAAGGCAATTCAGGTCTATGAGGAGGCTTTGAAAAATATGTCTTCGGGA ACTATATTTAGTTTATATTCAAATTTTCTATTGGGTATTGTGGCTCATAAAGAAGGAGAAATCAATATATCTGGGTTATCAGGTCACAATGAAAACTATA TATCACATCTCCTCAAAATATATGAAAGGGCTGAAAGTTTGGGTTGCATTACTGAAGATCTTGCTTGCAAACATGTGTCTTTACATTTACAACTGCAGCA ATTTGATGAGGGCAGGAAACTAGCAGCAAAGCTTTGCAGTGGAAAGCTTGCCGAATCAGCACAGTTATGGGAATTAAGGATCACTATAGAAATTAGATGT ATCACAGGGAATTCTCCTTCGCCAAGTGATGCTGATCTGCAATCCCTTTTTGAACTCCTTAGACAAATTTTGACAAAAGTGCCTGTTTCAAAATCAGAGA ACTTGTGGGTAAAGGTATGTTGTCACCATCAACATCTCTTTTTCCTAATCTCTTCAGTGAGTTATGTCTTGTATAGAATCTTCTTTGATATTAGTTTTGA GTTGATCTCCTGTTGTCTTGTAGAGAATCTTCTTAGATATTAGTTTAATTTATAAATACATTCTATTATAAATAAATAAATTATTTGATCCTTGGTCATT TGGTTTTTAGTCAGTTTCCTGGTCAAAATTACCCCGTTTATGCCTTTTTTTGTATCCAATAAGGAATATATGTATTTCTTGATGAGGACTAATTTTTTTG TTTGTTATTGTTAAGTTAATTCATGTCACTATGAACATGTCCACGTTGGAGTTTATTTCTTCATTTTGTCTCACTTTTCAGGAAGCATTGAATTTCTTTA TGCTTTCACTTCATTATAATACTTGGAGGCAAATACATGTTACATCTCCTTAATGCTAAGTTTTTTGTATTTAGCCTCAGCGATCAACATTCTACGTTAA TAGTTGTTTGTGCATTGTGTCTTTATTCAGTTAAGCTTGAATTGATTTTCTCTTCACTTTAACTGTTCTTCATGCTATAAAAATCATGAAGCTCTTTAAT TGTTTCATATTTTGAACTGTCACTTAATACAGGCCTTTAAATTTTACACAAATCAAAGACAGTACTTTGATAAACTGGTGGAAATTTCTGTAAGTTCTTT GACCAGAGATGGTGGAAGTGAAAGTGCATTTTCCCTCTCCTCTACAATTGTAAGTTTTATTCTTCAAAAGGATGGAATTCAGCAGGCCAGAGAAATGTAT AAACGATATCTAGCTTTACCACATCCTGGCCTTGCTCTATATAGAGGCTGCATTGGCCTAGAAACAAATGTTGCCTCAGTCGGAGATAAAAGTGGTCTCA TTAACGCTAGGAAATTATATGAATCTGCACTTGCAACTTATGATCAAAATGTAAGCCTGTGGCAAGATTATTATCGATTGGAGACCAAGATGGGAACATC AGAAAAGGCTACTGCTGTTTATTGGCGAGCAAGGAGAATTCTCAAAGATGCCACTGAATTTGTTGCTTCCTCAAACTTGTGATTATTTCTAAAGTAAGGT CATGGCTTTGGAGTTCAATTTTGACCACATTTAAATTTAAGGTTTCCTTCTCCGTGAGAGGGTGACAATGATGGATTTACCTCCCTTTTCCCTAAGGTGA TAGTAACTGTAATACAACCCTTGTATCCGACCCTTTTCATGCAGTGAAATTCTAATATACTCAGCAATTTCATAACTGTTGAGAATCGATTTTGAAGGAT TTTTATTTCATTGGATCGACATGCAGTGCAGTGTAGTAGAACTTCTGAATTTGATTTCGTTGTTACCACGTGTGAACATCATCTATTGCAGTAGGAATAT TGATCGATCAAGTGGGTTGTATAAGACCATGTCCCAGAAGTGCTATACTAATAAGCAAAATTTTAGAGAGTAAAATGAATCACT BLAST |
Tissue | flowers |
Gene name | LI_gene_19727; |
Additional information | details; |
FPAB | abscising flower pedicels |
FPNAB | non-abscising flower pedicels |
LF1 | lower flowers stage 1 |
LF2 | lower flowers stage 2 |
LF3 | lower flowers stage 3 |
LF4 | lower flowers stage 4 |
UF1 | upper flowers stage 1 |
UF2 | upper flowers stage 2 |
UF3 | upper flowers stage 3 |
UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_3474
Blastp | U3 small nucleolar RNA-associated protein 6 homolog from Mus with 23.99% of identity |
---|---|
Blastx | U3 small nucleolar RNA-associated protein 6 homolog from Mus with 24.79% of identity |
Eggnog | UTP6, small subunit (SSU) processome component, homolog (yeast)(COG5191) |
Kegg | Link to kegg annotations (216987) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019464069.1) |
Pfam | - |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |