Ll_transcript_261455

• Id Trinity: FTRINITY_DN50887_c0_g1_i3
• Name Transcript: Ll_transcript_261455
• Sequence: AGGTCGAAAATCTAAAGTAGAAACCTTTGCTGGTGCTTGTAAAACCTATACAATTGAGGCCATGATGGGTGACAAGAAAGCATTACAAGCAGGAACCAGC CACAATCTTGGGCAAAACTTTTCCCGTGCCTTTGGGACACAGGTCCAACTTAAGCTACTTTGAGAAGCTATTGTAAAAGTGGAAAGCATGGAATATTAGG ATATATCTGTTCAAATGAAGAAAAATTTACATCTCAAATCCTGGAAGGATCCATTAAACTTTGCATAATACTTCCAAAAAAATGGCATCTGTATATTGAG TTATTTATGGTGGATTTCTTTTGGCAATCAGGATATCATTATCTTTTTCCTGTCAGTATCAAACGAAATTTCACATTGATTTAATCTTCAAGTATTTAGA CTATCCTTTTAATGAGAATTAAAATGCTCAAAATCTATGATTGTGCAGTTCTTAGATGAAAATGGACAAAGGCAACATGTTTGGCAGACATCATGGGCGA TTAGTACACGTTTTATTGGAGGTATTATCATGACCCATGGAGATGATGCAGGCCTAATGCTTCCACCAAAGGTTGCTCCTGTACAGGTGGTAATTGTACC TATTTGGAAGAAAGATGATGAAAAAACGGCAGTTCTAAAGGCTACATCATCTGTAAAAGAAACTCTTCAGGCTGCAGGTATTAGAGTTAAACTTGATGAC TCAGATCAAAGAACCCCTGGATGGAAATTCAATTTCTGGGAGATGAAGGGAGTTCCTCTTAGAATTGAAATTGGTCCTCGTGATGTGTCTAGTGGAAGTG TGGTGATATCAAGGAGAGATGTTCCTGGAAAGCAGGGGAAAGTGTTTGGAGTCTCTATGGACCCTCCAATTTTGGAAGCTTTTGTGAAAGACAATTTGGA TGCGATACAGTCTTCTCTTTTGGAAAGGGCAATAGCATTTCGAGACAGCAATATTGTAGATGTGAGCTCATACGATGATCTTAAAGCGGCAATATCACAA GGCAAATGGGCAAGGGGCCCTTGGTCTGCTAG
• Tissue: flowers
• Gene name: LI_gene_20968;
• Additional information: details;

Expression of Ll_transcript_261455

FPKM

• FPAB: 0
• FPNAB: 0.2
• LF1: 0
• LF2: 0.2
• LF3: 0.1
• LF4: 0.1
• UF1: 0
• UF2: 0
• UF3: 0.2
• UF4: 0

Labels

• FPAB: abscising flower pedicels
• FPNAB   : non-abscising flower pedicels
• LF1: lower flowers stage 1
• LF2: lower flowers stage 2
• LF3: lower flowers stage 3
• LF4: lower flowers stage 4
• UF1: upper flowers stage 1
• UF2: upper flowers stage 2
• UF3: upper flowers stage 3
• UF4: upper flowers stage 4

Annotations of Ll_transcript_261455

• Blastp: Proline--tRNA ligase, chloroplastic/mitochondrial from Arabidopsis with 80.61% of identity
• Blastx: Proline--tRNA ligase, chloroplastic/mitochondrial from Arabidopsis with 79.1% of identity
• Eggnog: Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Ala-tRNA(Pro). The misacylated Cys- tRNA(Pro) is not edited by ProRS (By similarity)(COG0442)
• Kegg: Link to kegg annotations (AT5G52520)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019428366.1)
• Pfam: Anticodon binding domain (PF03129.19)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;