Ll_transcript_261456

• Id Trinity: FTRINITY_DN50887_c0_g1_i4
• Name Transcript: Ll_transcript_261456
• Sequence: CTGATCTAGTCATCATCACTCATTCTGAAAAGAAAAGAAGTGATGATGATTCTGTCTCTGCCTCTTGCTCTTACTCTGAGATTCCCTTCTTCTCTTCCCA TTCTACGCCGTCACAGCCGATACGGAATCTCTCTCCGTCCTCCTCCACTTCGCGCAACCTTCTCTGCGGCGGCGCCGGAGACTCACAATTCCTCCAAAAA ACAAGAGAAATTGATAACGCCAAGATCACAGGACTTCAATGCTTGGTATCTCGATATCATTGCCAACGCCGAACTTGCCGATTATGGTCCTGTTCGTGGC ACCATGGTTATTCGTCCCTACGGTTACGCTATTTGGGAATCCATTCAGGATTATTTAAACCGAAAGTTCAAGGACACTGGTCATAGTAACATGTATTTTC CACAATTTATTCCATACTCGTTTATTGAGAAAGAAGCAAGTCATGTCGAGGGTTTCAGTCCCGAGTTAGCACTAGTTACAATTGGAGGTGGAAAGGAACT TGAAGAGAAGCTTGTGGTTCGGCCTACAAGTGAAACCATTGTGAATCACATGTTCACTCAATGGATCAATAGTTACCGTGATCTCCCTCTCCTGATTAAC CAGTGGGCAAATGTCACAAGATGGGAGATGCGCACTAAACCTTTTGTGAGGACTCTTGAATTTCTTTGGCAAGAGGGCCATACCGCTCATGCAACTCCTG AAGAGGCAGAAAATGAGGCTATACAGATGATTGACATCTATACCAAATTTGCTTATGAGCAAGCTGCGATACCTGTTATTGCAGGTCGAAAATCTAAAGT AGAAACCTTTGCTGGTGCTTGTAAAACCTATACAATTGAGGCCATGATGGGTGACAAGAAAGCATTACAAGCAGGAACCAGCCACAATCTTGGGCAAAAC TTTTCCCGTGCCTTTGGGACACAGTTCTTAGATGAAAATGGACAAAGGCAACATGTTTGGCAGACATCATGGGCGATTAGTACACGTTTTATTGGAGGTA TTATCATGACCCATGGAGATGATGCAGGCCTAATGCTTCCACCAAAGGTTGCTCCTGTACAGGTGGTAATTGTACCTATTTGGAAGAAAGATGATGAAAA AACGGCAGTTCTAAAGGCTACATCATCTGTAAAAGAAACTCTTCAGGCTGCAGGTATTAGAGTTAAACTTGATGACTCAGATCAAAGAACCCCTGGATGG AAATTCAATTTCTGGGAGATGAAGGGAGTTCCTCTTAGAATTGAAATTGGTCCTCGTGATGTGTCTAGTGGAAGTGTGGTGATATCAAGGAGAGATGTTC CTGGAAAGCAGGGGAAAGTGTTTGGAGTCTCTATGGACCCTCCAATTTTGGAAGCTTTTGTGAAAGACAATTTGGATGCGATACAGTCTTCTCTTTTGGA AAGGGCAATAGCATTTCGAGACAGCAATATTGTAGATGTGAGCTCATACGATGATCTTAAAGCGGCAATATCACAAGGCAAATGGGCAAGGGGCCCTTGG TCTGCTAGTAATGAAGATGAGTTAAAAGTAAAAGAGGAAACAGGAGCTACTATCAGATGTTTTCCTTTCGAACAGCCACAAGGGACTAAACGGTGCTTGA TGACCGGAGATCCTGCTGAAGAAGTAGCAATTTTTGCCAAATCTTACTAACTCTGCATGCTTGTTCTTTCGTCAAACTCCCAAAGGTTATGATCTCGTAG CGACTTGTAGTTAAGTTTTTTGTTTGAATATTTACTTTTTGCTTTTTTGATAAGGCAATTTCATGTTGTATAACTCGGATAAGTTACCAAAGATTATTGA TTGAGTGTAACTTTAATTCTTACTCTATTGTAAGGAAGTTTTGTAACTTAATATTGCTGCAGTTTTTATGATAGTGGGTAATTTATTGATGCCTTTTAGG TGCTATATTAGTCTGAAT
• Tissue: flowers
• Gene name: LI_gene_20968;
• Additional information: details;

Expression of Ll_transcript_261456

FPKM

• FPAB: 8.1
• FPNAB: 15.8
• LF1: 19.2
• LF2: 14.8
• LF3: 15.9
• LF4: 16.3
• UF1: 18.6
• UF2: 16.2
• UF3: 14.3
• UF4: 15.1

Labels

• FPAB: abscising flower pedicels
• FPNAB   : non-abscising flower pedicels
• LF1: lower flowers stage 1
• LF2: lower flowers stage 2
• LF3: lower flowers stage 3
• LF4: lower flowers stage 4
• UF1: upper flowers stage 1
• UF2: upper flowers stage 2
• UF3: upper flowers stage 3
• UF4: upper flowers stage 4

Annotations of Ll_transcript_261456

• Blastp: Proline--tRNA ligase, chloroplastic/mitochondrial from Arabidopsis with 79.63% of identity
• Blastx: Proline--tRNA ligase, chloroplastic/mitochondrial from Arabidopsis with 79.63% of identity
• Eggnog: Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Ala-tRNA(Pro). The misacylated Cys- tRNA(Pro) is not edited by ProRS (By similarity)(COG0442)
• Kegg: Link to kegg annotations (AT5G52520)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019428366.1)
• Pfam: tRNA synthetase class II core domain (G, H, P, S and T) (PF00587.24)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;