| Id Trinity | FTRINITY_DN50954_c0_g1_i2 |
|---|---|
| Name Transcript | Ll_transcript_117024 |
| Sequence | CTTATTATTACACGTGACATAACATTCGGAATTGAAAACCCAAAAACAAAGAAACAGATCAGAGAGATAATTGGTTTTGGTTCGAAGGGATCACAGAGTA ACCGAATTGAATCAAAATGTTCCATCAATTTGGAGCGACGGCGGAGTCTCTGAGCAAGGCGTCGACGGCGGTGTTTCGGATCGGCACCGACGCGCACCTC TACGACGATCCTGAAGACGTGAACATAGCTCCTCTCCTCGACAGCAAATTCGATTCCGAGAAATGTGAAGCTCTCAAACGCTTACTCGCTCTCATCGCTC AAGGCTTCGATGTTTCCAATTTCTTCCCTCAGGTTGTTAAAAATGTTGCGTCTCAATCATTGGAAGTTAAGAAGCTGGCTTACTTGTACCTCCTGCATTA TGCTGAAAAGCATCCAAATGAAGTGTTGCTATCCATTAATTGTTTCCAAAAGGACCTGGGAGACACAAATCCATTGGTGAGGGCATGGGCGCTTCGTGCC ATGGCGGGAATCCGCCTTCATGTAATTGCGCCTCTTGTCATAGTTGCTGTTGGAAAATGTGCTAGAGATCCTTCTGTCTATGTTAGAAAATGTGCTGCTA ATGCTCTTCCTAAACTTCATGATTTGCGGATGGAGGAACATACTTCTGCAATTGAAGAGATTGTTGGACTATTGTTAAATGACCATTCCCCAGGAGTTGT TGGAGCTGCTGCTTCTGCATTTACCTCTGTTTGCCCGAACAATTTTTCATTGATTGGAAGAAATTACAGAAGGTTGTGTGAGATTCTTCCTGATGTGGAA GAGTGGGGTCAAATAATTCTAATCGGAATCCTTCTGCGGTATGTGATAGCGAGGCATGGGCTTGTCAAAGAATCGATCATGTGTTCTTTTTATAATAAAG ATGATGGCAATGTGGTGAAAGATGAACCAGACATTGTTTTTAAAAAAAATTCTAGTTATGCCAATGAGGAGGCTGTATCTGAATTAGCAAATATGATATT TCAGTGTTACATTGAAGGGCCAGATGAGTACTTATCACGGTCAAGTTCTACAAATAGGGTTGCTCCTAAATTAGATGTATCACAATTTACATCTTGCAGT AATGATGTTGTGAAGATCCTGCTGCAGTGCACATCACCATTGTTATGGTGTAATAACAGTGCAGTTGTACTTGCAGCTGCTGGAGTACATTGGATAATGG CTTCTAAGGGGAATGTTGAAACAATTGTTAAACCACTCTTGTTTATAATGCGATCATCATATGCCTCAAGATATGTGGTATTATGCAATATCCAAGTGTT TGCTAAAGCTATGCCATCTCTCTTCACTCCACACTATCAAGACTTCTTCATATGTTCTTCAGATTCCTATCAGATAAAAGCGCTGAAACTGGAGATACTT TCTTCTATTGCTACAGATTCATCTTTTCCATACATTCTGAAAGAGTTTCAGGATTATATTAGAGATTCCGACCGGAGATTTGTTGCTGATACAGTTGCTG CCTTAGGACTATGTGCCCAGCGACTTCCCAAAATGGCAACTACATGCTTGGAAGGATTGTTGGCTCTGATTAGACAGGAACTTTCGTGTGGTGAAATCAG ATCTGTGGATGGAGAAGAGACAGTGCTAATTCAGGCAATTATGTCCATCAAGTCAATTGTACAATTAGAACCCCCCAGTCATGAGAAGGTTATAATTCAG TTGATCCGTAGTTTGGATATAATCAAGGTTCCTGCTGCCCGTGCAATGATTATTTGGATGTTGGGGGAGTATTGCTCTTTGGGTGAGTTAATTCCAAGGA TGTTGAGTACGGTGCTAAAGTATCTTGCTTGGTGTTTTCCTTCAGAAGCAATAGAAACCAAGCTTCAGATTCTTAATACAACTGCAAAGGTCTTACTATG CATTAAGGGAGAAGATATTTGGACCCTGAGAAAAGTCTGGAGTTATGTAATTGAACTGGCTGAGTGCGATCTGAACTACGATGTCCGTGATCGTTCGCGT TTCTTAAAGAAACTTCTCTCAAGCAATTTGGAGCCTCAAAATTTGGAAGAAGAAAACAGTGAATCACAAAGAAGAGACCAGTCCTATGTACTTGCAGAAT GCATATTTGGTAGACAAATAAAAGCTGTGACAGTGTCATCTGAACCCATCAATTACCGGTTTTATCTCCCCGGGTCTCTTTCGCAGTTAGTATTCCATGC AGCTCCAGGATATGAACCTCTCCCAAAACCTTGTAGTCTTCCATATATTGATCTTGATCAGCGTGATGGAGCTTCTGAGGGTGATTCAGATGAGGAGGAT GGTTCTGGCACATCTGGATCATTGGATGAGGAAAGTGCTTCTGATTATAGCTCTGAACAGTCAATTACTGGTTCAAGTGAAGACAGTGGCAGTAACGAGA ATGTTTCTGGCAATGAAGGTGGCAACCATGCAGATCCATTGATTCAGATTTCAGACATTGGCAATGTCTATGATAACCAGAATGGTGGGGCTCATTCTAG CACAGCCGATTTTGGGGACTTGATGTCAACTAAGTCTCTTGAGTCTTGGTTGGATGAGGCACCCACATCATCAAACGAAACTGGAACAGAGCAAAACCGA GTTCATAGATCTTCAGCGAGAATAACAATCAGAAATATCGAAAGCCGAGTTAAACCCAAATGCTACACACTTTTAGATCCTACAAATGGAAATGGGTTAA AGGTGAATTATTCATTTTCATCTGAGGCTTCGAGCATTGCCTCCCATCTTATATGTCTAGAACTATACTTCGAAAATTTTTCATCGGAGCCCATGTTTGA TATAATCTTAATAGATGAGAATTCTAGTAAAAGCTCAGATTCTATGGACCAAATATCTCCGACATCTGAAAATACCTTGAAAATCCATACTGATAAACCA GCATTGGTTTCCATGGAGGAGATCCCTTCTCTGGAGCCTGGCCAGACAGCAAACCGGACTGTACTCGTTCGCTTCCATCACCACCTTTTGCCTCTGAAAC TGGCTATATTTTGCAATGACAAAACATTCCCTGTTAAGTTACGACCTGACATTGGATACTTTGTAAAACCACTTTCGATCAGTATTGAAGCTTTCAGAGA TAAGGAATCTCACCTTTGCGGGATGTTTGAATATGTGAGGAGGTATGTCAGTGTATCATTTGTTTTTTGTTGGATACAAATTGTTCGAGAATGGCATTAC TAATCCCTGGGGTTATGCACCTGTATCATGCATCTGATCAAGTTTCTTTTAGGGAGAAAGAATTATACCTTACTGTTCCTTATGCTCCTTACCTCTCCTC CACACTTATTTTTATATTTTAATATATTTTCTATTTTTTATTTTTTATGCTGGACAGTAAGATTTCTATCTTTAAAACTCCAAATAGTATAATAGAGTAA ACCTTGGATGCCACACTCAAATTCTTATCAAATGCCATCCATATTTGAACTTCAAAGAATAGGAACCTTCCCCCTTCATGTTACCCCTAACTGTACCATC TGTAACTAACTGTACCTATAGTTAGTTAGTTATTCCATTAGAACTTGAGGCCCTTCTAGAGTAAACGCTGTTTATCGGTGGCCCACTAACAGAAACTACC ATGGACGTCTTTGAATATAAAAGTAAACGAGATTTAAATTCTATGTAGTATAGATATTTCTCATTCAAGCTCTCTTTTTTATTTCTCTGTATATGTCTTT AACCATTCTTGGAAAGCAACTCCGAAATTTGGTTTTATGTTTCTCCGAATCCAGAAT BLAST |
| Tissue | flowers |
| Gene name | LI_gene_21084; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_117024
| Blastp | AP3-complex subunit beta-A from Arabidopsis with 57.51% of identity |
|---|---|
| Blastx | AP3-complex subunit beta-A from Arabidopsis with 55.88% of identity |
| Eggnog | The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins(COG5096) |
| Kegg | Link to kegg annotations (AT3G55480) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019432911.1) |
| Pfam | Adaptin N terminal region (PF01602.19) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |