| Id Trinity | FTRINITY_DN50954_c0_g1_i4 |
|---|---|
| Name Transcript | Ll_transcript_117026 |
| Sequence | CTTATTATTACACGTGACATAACATTCGGAATTGAAAACCCAAAAACAAAGAAACAGATCAGAGAGATAATTGGTTTTGGTTCGAAGGGATCACAGAGTA ACCGAATTGAATCAAAATGTTCCATCAATTTGGAGCGACGGCGGAGTCTCTGAGCAAGGCGTCGACGGCGGTGTTTCGGATCGGCACCGACGCGCACCTC TACGACGATCCTGAAGACGTGAACATAGCTCCTCTCCTCGACAGCAAATTCGATTCCGAGAAATGTGAAGCTCTCAAACGCTTACTCGCTCTCATCGCTC AAGGCTTCGATGTTTCCAATTTCTTCCCTCAGGTTGTTAAAAATGTTGCGTCTCAATCATTGGAAGTTAAGAAGCTGGCTTACTTGTACCTCCTGCATTA TGCTGAAAAGCATCCAAATGAAGTGTTGCTATCCATTAATTGTTTCCAAAAGGACCTGGGAGACACAAATCCATTGGTGAGGGCATGGGCGCTTCGTGCC ATGGCGGGAATCCGCCTTCATGTAATTGCGCCTCTTGTCATAGTTGCTGTTGGAAAATGTGCTAGAGATCCTTCTGTCTATGTTAGAAAATGTGCTGCTA ATGCTCTTCCTAAACTTCATGATTTGCGGATGGAGGAACATACTTCTGCAATTGAAGAGATTGTTGGACTATTGTTAAATGACCATTCCCCAGGAGTTGT TGGAGCTGCTGCTTCTGCATTTACCTCTGTTTGCCCGAACAATTTTTCATTGATTGGAAGAAATTACAGAAGGTTGTGTGAGATTCTTCCTGATGTGGAA GAGTGGGGTCAAATAATTCTAATCGGAATCCTTCTGCGGTATGTGATAGCGAGGCATGGGCTTGTCAAAGAATCGATCATGTGTTCTTTTTATAATAAAG ATGATGGCAATGTGGTGAAAGATGAACCAGACATTGTTTTTAAAAAAAATTCTAGTTATGCCAATGAGGAGGCTGTATCTGAATTAGCAAATATGATATT TCAGTGTTACATTGAAGGGCCAGATGAGTACTTATCACGGTCAAGTTCTACAAATAGGGTTGCTCCTAAATTAGATGTATCACAATTTACATCTTGCAGT AATGATGTTGTGAAGATCCTGCTGCAGTGCACATCACCATTGTTATGGTGTAATAACAGTGCAGTTGTACTTGCAGCTGCTGGAGTACATTGGATAATGG CTTCTAAGGGGAATGTTGAAACAATTGTTAAACCACTCTTGTTTATAATGCGATCATCATATGCCTCAAGATATGTGGTATTATGCAATATCCAAGTGTT TGCTAAAGCTATGCCATCTCTCTTCACTCCACACTATCAAGACTTCTTCATATGTTCTTCAGATTCCTATCAGATAAAAGCGCTGAAACTGGAGATACTT TCTTCTATTGCTACAGATTCATCTTTTCCATACATTCTGAAAGAGTTTCAGCGTGTTGCTAGGATTATATTAGAGATTCCGACCGGAGATTTGTTGCTGA TACAGTTGCTGCCTTAGGACTATGTGCCCAGCGACTTCCCAAAATGGCAACTACATGCTTGGAAGGATTGTTGGCTCTGATTAGACAGGAACTTTCGTGT GGTGAAATCAGATCTGTGGATGGAGAAGAGACAGTGCTAATTCAGGCAATTATGTCCATCAAGTCAATTGTACAATTAGAACCCCCCAGTCATGAGAAGG TTATAATTCAGTTGATCCGTAGTTTGGATATAATCAAGGTTCCTGCTGCCCGTGCAATGATTATTTGGATGTTGGGGGAGTATTGCTCTTTGGGTGAGTT AATTCCAAGGATGTTGAGTACGGTGCTAAAGTATCTTGCTTGGTGTTTTCCTTCAGAAGCAATAGAAACCAAGCTTCAGATTCTTAATACAACTGCAAAG GTCTTACTATGCATTAAGGGAGAAGATATTTGGACCCTGAGAAAAGTCTGGAGTTATGTAATTGAACTGGCTGAGTGCGATCTGAACTACGATGTCCGTG ATCGTTCGCGTTTCTTAAAGAAACTTCTCTCAAGCAATTTGGAGCCTCAAAATTTGGAAGAAGAAAACAGTGAATCACAAAGAAGAGACCAGTCCTATGT ACTTGCAGAATGCATATTTGGTAGACAAATAAAAGCTGTGACAGTGTCATCTGAACCCATCAATTACCGGTTTTATCTCCCCGGGTCTCTTTCGCAGTTA GTATTCCATGCAGCTCCAGGATATGAACCTCTCCCAAAACCTTGTAGTCTTCCATATATTGATCTTGATCAGCGTGATGGAGCTTCTGAGGGTGATTCAG ATGAGGAGGATGGTTCTGGCACATCTGGATCATTGGATGAGGAAAGTGCTTCTGATTATAGCTCTGAACAGTCAATTACTGGTTCAAGTGAAGACAGTGG CAGTAACGAGAATGTTTCTGGCAATGAAGGTGGCAACCATGCAGATCCATTGATTCAGATTTCAGACATTGGCAATGTCTATGATAACCAGAATGGTGGG GCTCATTCTAGCACAGCCGATTTTGGGGACTTGATGTCAACTAAGTCTCTTGAGTCTTGGTTGGATGAGGCACCCACATCATCAAACGAAACTGGAACAG AGCAAAACCGAGTTCATAGATCTTCAGCGAGAATAACAATCAGAAATATCGAAAGCCGAGTTAAACCCAAATGCTACACACTTTTAGATCCTACAAATGG AAATGGGTTAAAGGTGAATTATTCATTTTCATCTGAGGCTTCGAGCATTGCCTCCCATCTTATATGTCTAGAACTATACTTCGAAAATTTTTCATCGGAG CCCATGTTTGATATAATCTTAATAGATGAGAATTCTAGTAAAAGCTCAGATTCTATGGACCAAATATCTCCGACATCTGAAAATACCTTGAAAATCCATA CTGATAAACCAGCATTGGTTTCCATGGAGGAGATCCCTTCTCTGGAGCCTGGCCAGACAGCAAACCGGACTGTACTCGTTCGCTTCCATCACCACCTTTT GCCTCTGAAACTGGCTATATTTTGCAATGACAAAACATTCCCTGTTAAGTTACGACCTGACATTGGATACTTTGTAAAACCACTTTCGATCAGTATTGAA GCTTTCAGAGATAAGGAATCTCACCTTTGCGGGATGTTTGAATATGTGAGGAGTTGCGCCTTCACTGATCACATTCAAGAGCTGAACAAGGGAACTAACT CTTTGACAGAGGACAAATTTCTTGTGATCTGTGAAAGCTTAGCACTTAAGATGCTGAGCAATGCAAATCTTTCTCTTGTATCTGTGGATATGCCGGTCGC TTCCAACCTTGATGATGCTTCTGGTTTGTGCTTGCGTTTCAGCAGTGAGATCTTGAGCAACTCCATACCATGTTTAATTACAGTTACTGTTGAAGGTAAA TGCTCCGACCCATTGACTGTTTCTGCAAAAGTCAACTGTGAAGAGACTGTATTTGGCTTAAATTTCTTAAATAGGGTTGTCAATTTCTTGGTGGAACCAT CTGTTACCCACTCATAAGTTTTGATATTGTATAGAAGATTCATAAATATTATTCATTTATGAGATGATATATTGGAAAAACTTGAAGTGCAATCGTTTTG GTTTTGGATGTATTTTAGGCTATGGTGAGTTATTGGAGTTATGGTTTTCCATTTTTTAATCTGTTGGGAAGGATGAAAATGGAGGGAGGTTTTGTAATTC AACCTTGTATGACTGTAATCTCTAATTTTCCATAGATTTTCATGTCTTCTTTTCAATTCTCATTGAGTGTGGTTATGGTTTCTGGTGAAATGGAGCTTTC TAATTTAGTTTCTGATTCAGTTGTAAGCAAAACACAACTATTGTATGAGGAATTTATACTGAACCTTTTCTGAGAAGCATATTTTGTATTTTACTGAATT TTGATGTGAGATAAAAGAGTTGCTATGTTCATAAGCCTTCACTTTTATGGAGTTGCTATGGTCCCCTCTACCTAAATGTTTGATGC BLAST |
| Tissue | flowers |
| Gene name | LI_gene_21084; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_117026
| Blastp | AP3-complex subunit beta-A from Arabidopsis with 52.88% of identity |
|---|---|
| Blastx | AP3-complex subunit beta-A from Arabidopsis with 52.03% of identity |
| Eggnog | The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins(COG5096) |
| Kegg | Link to kegg annotations (AT3G55480) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019432911.1) |
| Pfam | Adaptin N terminal region (PF01602.19) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |