| Id Trinity | FTRINITY_DN50954_c0_g1_i6 |
|---|---|
| Name Transcript | Ll_transcript_117028 |
| Sequence | CTTATTATTACACGTGACATAACATTCGGAATTGAAAACCCAAAAACAAAGAAACAGATCAGAGAGATAATTGGTTTTGGTTCGAAGGGATCACAGAGTA ACCGAATTGAATCAAAATGTTCCATCAATTTGGAGCGACGGCGGAGTCTCTGAGCAAGGCGTCGACGGCGGTGTTTCGGATCGGCACCGACGCGCACCTC TACGACGATCCTGAAGACGTGAACATAGCTCCTCTCCTCGACAGCAAATTCGATTCCGAGAAATGTGAAGCTCTCAAACGCTTACTCGCTCTCATCGCTC AAGGCTTCGATGTTTCCAATTTCTTCCCTCAGGTTGTTAAAAATGTTGCGTCTCAATCATTGGAAGTTAAGAAGCTGGCTTACTTGTACCTCCTGCATTA TGCTGAAAAGCATCCAAATGAAGTGTTGCTATCCATTAATTGTTTCCAAAAGGACCTGGGAGACACAAATCCATTGGTGAGGGCATGGGCGCTTCGTGCC ATGGCGGGAATCCGCCTTCATGTAATTGCGCCTCTTGTCATAGTTGCTGTTGGAAAATGTGCTAGAGATCCTTCTGTCTATGTTAGAAAATGTGCTGCTA ATGCTCTTCCTAAACTTCATGATTTGCGGATGGAGGAACATACTTCTGCAATTGAAGAGGTTCAGCTCATAAACTTTGATTCTTCATATGGTGCAGATTG TTGGACTATTGTTAAATGACCATTCCCCAGGAGTTGTTGGAGCTGCTGCTTCTGCATTTACCTCTGTTTGCCCGAACAATTTTTCATTGATTGGAAGAAA TTACAGAAGGTTGTGTGAGATTCTTCCTGATGTGGAAGAGTGGGGTCAAATAATTCTAATCGGAATCCTTCTGCGGTATGTGATAGCGAGGCATGGGCTT GTCAAAGAATCGATCATGTGTTCTTTTTATAATAAAGATGATGGCAATGTGGTGAAAGATGAACCAGACATTGTTTTTAAAAAAAATTCTAGTTATGCCA ATGAGGAGGCTGTATCTGAATTAGCAAATATGATATTTCAGTGTTACATTGAAGGGCCAGATGAGTACTTATCACGGTCAAGTTCTACAAATAGGGTTGC TCCTAAATTAGATGTATCACAATTTACATCTTGCAGTAATGATGTTGTGAAGATCCTGCTGCAGTGCACATCACCATTGTTATGGTGTAATAACAGTGCA GTTGTACTTGCAGCTGCTGGAGTACATTGGATAATGGCTTCTAAGGGGAATGTTGAAACAATTGTTAAACCACTCTTGTTTATAATGCGATCATCATATG CCTCAAGATATGTGGTATTATGCAATATCCAAGTGTTTGCTAAAGCTATGCCATCTCTCTTCACTCCACACTATCAAGACTTCTTCATATGTTCTTCAGA TTCCTATCAGATAAAAGCGCTGAAACTGGAGATACTTTCTTCTATTGCTACAGATTCATCTTTTCCATACATTCTGAAAGAGTTTCAGGATTATATTAGA GATTCCGACCGGAGATTTGTTGCTGATACAGTTGCTGCCTTAGGACTATGTGCCCAGCGACTTCCCAAAATGGCAACTACATGCTTGGAAGGATTGTTGG CTCTGATTAGACAGGAACTTTCGTGTGGTGAAATCAGATCTGTGGATGGAGAAGAGACAGTGCTAATTCAGGCAATTATGTCCATCAAGTCAATTGTACA ATTAGAACCCCCCAGTCATGAGAAGGTTATAATTCAGTTGATCCGTAGTTTGGATATAATCAAGGTTCCTGCTGCCCGTGCAATGATTATTTGGATGTTG GGGGAGTATTGCTCTTTGGGTGAGTTAATTCCAAGGATGTTGAGTACGGTGCTAAAGTATCTTGCTTGGTGTTTTCCTTCAGAAGCAATAGAAACCAAGC TTCAGATTCTTAATACAACTGCAAAGGTCTTACTATGCATTAAGGGAGAAGATATTTGGACCCTGAGAAAAGTCTGGAGTTATGTAATTGAACTGGCTGA GTGCGATCTGAACTACGATGTCCGTGATCGTTCGCGTTTCTTAAAGAAACTTCTCTCAAGCAATTTGGAGCCTCAAAATTTGGAAGAAGAAAACAGTGAA TCACAAAGAAGAGACCAGTCCTATGTACTTGCAGAATGCATATTTGGTAGACAAATAAAAGCTGTGACAGTGTCATCTGAACCCATCAATTACCGGTTTT ATCTCCCCGGGTCTCTTTCGCAGTTAGTATTCCATGCAGCTCCAGGATATGAACCTCTCCCAAAACCTTGTAGTCTTCCATATATTGATCTTGATCAGCG TGATGGAGCTTCTGAGGGTGATTCAGATGAGGAGGATGGTTCTGGCACATCTGGATCATTGGATGAGGAAAGTGCTTCTGATTATAGCTCTGAACAGTCA ATTACTGGTTCAAGTGAAGACAGTGGCAGTAACGAGAATGTTTCTGGCAATGAAGGTGGCAACCATGCAGATCCATTGATTCAGATTTCAGACATTGGCA ATGTCTATGATAACCAGAATGGTGGGGCTCATTCTAGCACAGCCGATTTTGGGGACTTGATGTCAACTAAGTCTCTTGAGTCTTGGTTGGATGAGGCACC CACATCATCAAACGAAACTGGAACAGAGCAAAACCGAGTTCATAGATCTTCAGCGAGAATAACAATCAGAAATATCGAAAGCCGAGTTAAACCCAAATGC TACACACTTTTAGATCCTACAAATGGAAATGGGTTAAAGGTGAATTATTCATTTTCATCTGAGGCTTCGAGCATTGCCTCCCATCTTATATGTCTAGAAC TATACTTCGAAAATTTTTCATCGGAGCCCATGTTTGATATAATCTTAATAGATGAGAATTCTAGTAAAAGCTCAGATTCTATGGACCAAATATCTCCGAC ATCTGAAAATACCTTGAAAATCCATACTGATAAACCAGCATTGGTTTCCATGGAGGAGATCCCTTCTCTGGAGCCTGGCCAGACAGCAAACCGGACTGTA CTCGTTCGCTTCCATCACCACCTTTTGCCTCTGAAACTGGCTATATTTTGCAATGACAAAACATTCCCTGTTAAGTTACGACCTGACATTGGATACTTTG TAAAACCACTTTCGATCAGTATTGAAGCTTTCAGAGATAAGGAATCTCACCTTTGCGGGATGTTTGAATATGTGAGGAGGTATGTCAGTGTATCATTTGT TTTTTGTTGGATACAAATTGTTCGAGAATGGCATTACTAATCCCTGGGGTTATGCACCTGTATCATGCATCTGATCAAGTTTCTTTTAGGGAGAAAGAAT TATACCTTACTGTTCCTTATGCTCCTTACCTCTCCTCCACACTTATTTTTATATTTTAATATATTTTCTATTTTTTATTTTTTATGCTGGACAGTAAGAT TTCTATCTTTAAAACTCCAAATAGTATAATAGAGTAAACCTTGGATGCCACACTCAAATTCTTATCAAATGCCATCCATATTTGAACTTCAAAGAATAGG AACCTTCCCCCTTCATGTTACCCCTAACTGTACCATCTGTAACTAACTGTACCTATAGTTAGTTAGTTATTCCATTAGAACTTGAGGCCCTTCTAGAGTA AACGCTGTTTATCGGTGGCCCACTAACAGAAACTACCATGGACGTCTTTGAATATAAAAGTAAACGAGATTTAAATTCTATGTAGTATAGATATTTCTCA TTCAAGCTCTCTTTTTTATTTCTCTGTATATGTCTTTAACCATTCTTGGAAAGCAACTCCGAAATTTGGTTTTATGTTTCTCCGAATCCAGAAT BLAST |
| Tissue | flowers |
| Gene name | LI_gene_21084; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_117028
| Blastp | AP3-complex subunit beta-A from Arabidopsis with 55.71% of identity |
|---|---|
| Blastx | AP3-complex subunit beta-A from Arabidopsis with 54.1% of identity |
| Eggnog | The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins(COG5096) |
| Kegg | Link to kegg annotations (AT3G55480) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019432911.1) |
| Pfam | Adaptin N terminal region (PF01602.19) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |