| Id Trinity | FTRINITY_DN50954_c0_g1_i9 |
|---|---|
| Name Transcript | Ll_transcript_117031 |
| Sequence | CTTATTATTACACGTGACATAACATTCGGAATTGAAAACCCAAAAACAAAGAAACAGATCAGAGAGATAATTGGTTTTGGTTCGAAGGGATCACAGAGTA ACCGAATTGAATCAAAATGTTCCATCAATTTGGAGCGACGGCGGAGTCTCTGAGCAAGGCGTCGACGGCGGTGTTTCGGATCGGCACCGACGCGCACCTC TACGACGATCCTGAAGACGTGAACATAGCTCCTCTCCTCGACAGCAAATTCGATTCCGAGAAATGTGAAGCTCTCAAACGCTTACTCGCTCTCATCGCTC AAGGCTTCGATGTTTCCAATTTCTTCCCTCAGGTTGTTAAAAATGTTGCGTCTCAATCATTGGAAGTTAAGAAGCTGGCTTACTTGTACCTCCTGCATTA TGCTGAAAAGCATCCAAATGAAGTGTTGCTATCCATTAATTGTTTCCAAAAGGACCTGGGAGACACAAATCCATTGGTGAGGGCATGGGCGCTTCGTGCC ATGGCGGGAATCCGCCTTCATGTAATTGCGCCTCTTGTCATAGTTGCTGTTGGAAAATGTGCTAGAGATCCTTCTGTCTATGTTAGAAAATGTGCTGCTA ATGCTCTTCCTAAACTTCATGATTTGCGGATGGAGGAACATACTTCTGCAATTGAAGAGGTCCATCTGTTTTGTTCTGCTTATCATAGATTTTCCTTCAC ATGTACTAGTACCTTGACTACATTCAGCTTAACCTAGTTGGCAGAATAACTTGAAGAGAAAAATGACTTATTTTCTGCAGGGTTTTCTTGGGGCATATAC TTTTGAACTAAGAGTTATTTATAGAAAGTTTTGTGCCAGAGATTTGACTTCATTAATGTGTGGTTGCAAGTCTATTTGCAGGTTCAGCTCATAAACTTTG ATTCTTCATATGGTGCAGATTGTTGGACTATTGTTAAATGACCATTCCCCAGGAGTTGTTGGAGCTGCTGCTTCTGCATTTACCTCTGTTTGCCCGAACA ATTTTTCATTGATTGGAAGAAATTACAGAAGGTTGTGTGAGATTCTTCCTGATGTGGAAGAGTGGGGTCAAATAATTCTAATCGGAATCCTTCTGCGGTA TGTGATAGCGAGGCATGGGCTTGTCAAAGAATCGATCATGTGTTCTTTTTATAATAAAGATGATGGCAATGTGGTGAAAGATGAACCAGACATTGTTTTT AAAAAAAATTCTAGTTATGCCAATGAGGAGGCTGTATCTGAATTAGCAAATATGATATTTCAGTGTTACATTGAAGGGCCAGATGAGTACTTATCACGGT CAAGTTCTACAAATAGGGTTGCTCCTAAATTAGATGTATCACAATTTACATCTTGCAGTAATGATGTTGTGAAGATCCTGCTGCAGTGCACATCACCATT GTTATGGTGTAATAACAGTGCAGTTGTACTTGCAGCTGCTGGAGTACATTGGATAATGGCTTCTAAGGGGAATGTTGAAACAATTGTTAAACCACTCTTG TTTATAATGCGATCATCATATGCCTCAAGATATGTGGTATTATGCAATATCCAAGTGTTTGCTAAAGCTATGCCATCTCTCTTCACTCCACACTATCAAG ACTTCTTCATATGTTCTTCAGATTCCTATCAGATAAAAGCGCTGAAACTGGAGATACTTTCTTCTATTGCTACAGATTCATCTTTTCCATACATTCTGAA AGAGTTTCAGCGTGTTGCTAGGATTATATTAGAGATTCCGACCGGAGATTTGTTGCTGATACAGTTGCTGCCTTAGGACTATGTGCCCAGCGACTTCCCA AAATGGCAACTACATGCTTGGAAGGATTGTTGGCTCTGATTAGACAGGAACTTTCGTGTGGTGAAATCAGATCTGTGGATGGAGAAGAGACAGTGCTAAT TCAGGCAATTATGTCCATCAAGTCAATTGTACAATTAGAACCCCCCAGTCATGAGAAGGTTATAATTCAGTTGATCCGTAGTTTGGATATAATCAAGGTT CCTGCTGCCCGTGCAATGATTATTTGGATGTTGGGGGAGTATTGCTCTTTGGGTGAGTTAATTCCAAGGATGTTGAGTACGGTGCTAAAGTATCTTGCTT GGTGTTTTCCTTCAGAAGCAATAGAAACCAAGCTTCAGATTCTTAATACAACTGCAAAGGTCTTACTATGCATTAAGGGAGAAGATATTTGGACCCTGAG AAAAGTCTGGAGTTATGTAATTGAACTGGCTGAGTGCGATCTGAACTACGATGTCCGTGATCGTTCGCGTTTCTTAAAGAAACTTCTCTCAAGCAATTTG GAGCCTCAAAATTTGGAAGAAGAAAACAGTGAATCACAAAGAAGAGACCAGTCCTATGTACTTGCAGAATGCATATTTGGTAGACAAATAAAAGCTGTGA CAGTGTCATCTGAACCCATCAATTACCGGTTTTATCTCCCCGGGTCTCTTTCGCAGTTAGTATTCCATGCAGCTCCAGGATATGAACCTCTCCCAAAACC TTGTAGTCTTCCATATATTGATCTTGATCAGCGTGATGGAGCTTCTGAGGGTGATTCAGATGAGGAGGATGGTTCTGGCACATCTGGATCATTGGATGAG GAAAGTGCTTCTGATTATAGCTCTGAACAGTCAATTACTGGTTCAAGTGAAGACAGTGGCAGTAACGAGAATGTTTCTGGCAATGAAGGTGGCAACCATG CAGATCCATTGATTCAGATTTCAGACATTGGCAATGTCTATGATAACCAGAATGGTGGGGCTCATTCTAGCACAGCCGATTTTGGGGACTTGATGTCAAC TAAGTCTCTTGAGTCTTGGTTGGATGAGGCACCCACATCATCAAACGAAACTGGAACAGAGCAAAACCGAGTTCATAGATCTTCAGCGAGAATAACAATC AGAAATATCGAAAGCCGAGTTAAACCCAAATGCTACACACTTTTAGATCCTACAAATGGAAATGGGTTAAAGGTGAATTATTCATTTTCATCTGAGGCTT CGAGCATTGCCTCCCATCTTATATGTCTAGAACTATACTTCGAAAATTTTTCATCGGAGCCCATGTTTGATATAATCTTAATAGATGAGAATTCTAGTAA AAGCTCAGATTCTATGGACCAAATATCTCCGACATCTGAAAATACCTTGAAAATCCATACTGATAAACCAGCATTGGTTTCCATGGAGGAGATCCCTTCT CTGGAGCCTGGCCAGACAGCAAACCGGACTGTACTCGTTCGCTTCCATCACCACCTTTTGCCTCTGAAACTGGCTATATTTTGCAATGACAAAACATTCC CTGTTAAGTTACGACCTGACATTGGATACTTTGTAAAACCACTTTCGATCAGTATTGAAGCTTTCAGAGATAAGGAATCTCACCTTTGCGGGATGTTTGA ATATGTGAGGAGGTATGTCAGTGTATCATTTGTTTTTTGTTGGATACAAATTGTTCGAGAATGGCATTACTAATCCCTGGGGTTATGCACCTGTATCATG CATCTGATCAAGTTTCTTTTAGGGAGAAAGAATTATACCTTACTGTTCCTTATGCTCCTTACCTCTCCTCCACACTTATTTTTATATTTTAATATATTTT CTATTTTTTATTTTTTATGCTGGACAGTAAGATTTCTATCTTTAAAACTCCAAATAGTATAATAGAGTAAACCTTGGATGCCACACTCAAATTCTTATCA AATGCCATCCATATTTGAACTTCAAAGAATAGGAACCTTCCCCCTTCATGTTACCCCTAACTGTACCATCTGTAACTAACTGTACCTATAGTTAGTTAGT TATTCCATTAGAACTTGAGGCCCTTCTAGAGTAAACGCTGTTTATCGGTGGCCCACTAACAGAAACTACCATGGACGTCTTTGAATATAAAAGTAAACGA GATTTAAATTCTATGTAGTATAGATATTTCTCATTCAAGCTCTCTTTTTTATTTCTCTGTATATGTCTTTAACCATTCTTGGAAAGCAACTCCGAAATTT GGTTTTATGTTTCTCCGAATCCAGAAT BLAST |
| Tissue | flowers |
| Gene name | LI_gene_21084; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_117031
| Blastp | AP3-complex subunit beta-A from Arabidopsis with 50.92% of identity |
|---|---|
| Blastx | AP3-complex subunit beta-A from Arabidopsis with 50% of identity |
| Eggnog | The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins(COG5096) |
| Kegg | Link to kegg annotations (AT3G55480) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019432911.1) |
| Pfam | Adaptin N terminal region (PF01602.19) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |