| Id Trinity | FTRINITY_DN51181_c0_g1_i9 |
|---|---|
| Name Transcript | Ll_transcript_206436 |
| Sequence | AACTCATACATGCATATAACTTCTAGAAGCAAAAAGAAATAAGATGAAAGAAAGAAGTAACCCTTTGGTATGAGGTGTTCTAAATTACTAACTCCTAACC TTTTGTATCCAAAAACATTTGGAGTGATTCAAAATAGAATTGGAGTGGTTGTTTCGTGATGTGGCCAATAAGCCCCGTTCTAGGCTCCTTGGTTTAGATG TTGGCGATAAATACGTTGGTCTCGCTCTTTCTGACTTCAATAATCAAATTGCTTCTCCTTTCAGTGTTCTTGTTAGGAAGAAGTCTAATATTGCTTTGAT GGCTTCTGATTTTGAATGTCTCATATCTCAATATTCTTTGAAGGGCTTTGTTATTGGTATCCCTTTTGATAGACATCGTGTTTCGGCTGATGCTGTGCAA GTCAAGGCCTTCATTAATGACCTCTCTAGTACTAAAAAGCTGCAAGGTATACCATATACATATTGGAATGAGCGCTTCACTTCTAAGAACGTGGAGTTGT TTTTAAAGCCTCTGGACTTGTATCATCCCTATCATTCCAAGACTATGCTAGACAAGTTTGCTGCTGTAGGAATACTTCAGGGGTACCTGGATTATGCTAA CAGAAAGGTGAAGTTGGAAACGGAGTAAGAATCTCTTAATAGACTATGTTCTCAAGCATACCAATTGAACTCAACCTTTATTGTTTGACATGATTGTCAC TCCTCAAAACTACTCACTTGCTACACAGGTAGAGAGGCATTCTCCAGAAATCACATATACAAACCTGAGGACAAAAAAAACAAAGGCTTGAGGTTGTTCC AATTGAGCTGAAAGCTATTTTGTTAGTAGAATCAGTTAGTTCCACAAAAGTTTAAGCTCTTTTCTCCCTTGATAATATTTATGATATAGAATTTAGACAT TTTTTTGTAGGAGAGCAGTCACCTAATTATTTCATCACCGTAACGTTTATTCTTTGGAAATTGTATCTCAAGTCAAGTTTTTTTTTTCTTTTCTTAATGC AAAATATTTACAACGTTGAATCCAAATAAGATTGATTCTTATAACAACATGAAAACTGAAAAGGAGATGTGAGGTTTAGTTGTGGTACTTTACTAAGACC GTTCTCGTCTTTTGCTTTAACGTTTCTTTATATATTCAGTCTAGCTGACAAACTTATGAAAATAATTATTATAATATTACAAGAACCATTTTATTAAACA ATATCTTAAGTCTGAGGGTTAAATAATCCTCAAATAAATTCTTATTAATATTTTCTTTGCCAGTAAGAATAAGGCTATACATACTTATTCTTTCTTATAT CTCACGAAGTGAGAGCCTCGTATACTAACAATTATTTTAGAATATATACTTTATAAAGTATAGTAAAAATAATATATTTAGTTTTCTAGAATAAAAATCT TCCCTGGTAGAATTAGGAAATTGTATTTTTATATCTAATGATCTTACATACAAATGGTATGATAGAGACACAATTGCATCACTTGGTGAGATCATGTGAA TTTGGATCCCTGCAACTATTTTCACCCTGTCTTCATATTTTGACAGTATTTTCTTGGCTACTTTGTACTTATACAATACTGTTTTATTAAATGCTATCCG AATAAACTTACAATTCACATGTTGATTGACTATCCAATCTTAATACCATTTATGTCCAAGTTGTCTAGCATCTTTGGTCTCTTGTAATTCTTTAACAAGA GTGAGGAACAAACAACAGTAACAGAAGAAGCGGCCATAGCGGCTCCGGCAATCCATGGTGGTAACCTGAACCTAGTGAATGGGTAAAGGACCCCTGCAGC AATTGGAATAGCTAGAAGATTATATCCAAGAGCCCAAATGTAGTTCAGACCAATACGTGAG BLAST |
| Tissue | flowers |
| Gene name | LI_gene_21549; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_206436
| Blastp | Putative pre-16S rRNA nuclease from Syntrophomonas with 33.7% of identity |
|---|---|
| Blastx | Probable copper-transporting ATPase HMA5 from Arabidopsis with 80% of identity |
| Eggnog | Could be a nuclease that resolves Holliday junction intermediates in genetic recombination (By similarity)(COG0816) |
| Kegg | Link to kegg annotations (Swol_0470) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019420916.1) |
| Pfam | Holliday junction resolvase (PF03652.14) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |