| Id Trinity | FTRINITY_DN51221_c0_g1_i2 |
|---|---|
| Name Transcript | Ll_transcript_261894 |
| Sequence | AATAATTTTAATTAAAAAAAGCATGAAGACTCTGTTTTTCTTATTCTCTACTAGTATCTGCTTCTTCTCATGACTTTAGCTTTGATCAAAAAGTTTCTTA CTTGATCGTTTCCTACGCCATGATTCATTGATTTGTGGTTTCTCCTCCCTTATACATTATAAAGTTTGAAACTTTCCATCATCATTGTTCAGAATTTAAA CATGGGTTCATCGGAGATTGATCAAAACGTTTCTCAATCTCTTTCTTCAAACAATCCCAACCCCATTGACCCTAGAAGTTATCAATTGGAGGTGTTTGAA GTTGCAAAGAAGAGGAATACAATAGCAGTGTTGGATACAGGTTCTGGTAAAACTTTGGTAGCAGTGATGCTCATAAAAGAAGCTTATAAAGCTATCAAGT CTAGTCACATTAAAAAGTTGATTATTTTCTTAGCTCCCACTGTTAATCTTGTCAACCAGCAATTTAAACATATAAAAGATCTTACAGGTTTTAAAGTCGA AGAGTACTACGGGGCTAAGGGAGTGGATACATGGGATTTGAAAATCTGGGAGAAGGAGATTAGTGAAAATGATGTACTGGTTATGACACCCCAGATTCTT TTGGATGCTTTAAGAAAGGCATTCTTAAGTATAGAAATGATATGCTTGATGATTATGGATGAATGTCATAGAGCAACCGGCAAACATCCCTATTCAAAAA TAATGGAAGAGTTCTATCACAAAGCTAATGAAAAGCCAAAGATTTTTGGGATGACAGCATCACCAGTAGGTAAAAAAGTCGGTGTTTCCTCTACCAAGGG TTGTGAGGGTCAAATATCAGAACTTGAATACATCTTGGATTCTCGGAGATATACTGTTGAAGATAGGAAAGAAATAGATATACATATCCCTTCTGCAAAA GAGAGTTGTAGATATTATGACCAAGCACAATACCCTGTGTTGAGGTTGAAGTTAAAGATTGAAGCCTTGTTCGAGTCCAATGCATTGTTCTCAGAATTGC GAAGTTTGGCGCAAAGTGAGGATGTGGATTATAAATTTAAGAAACTGCATAATGGGATGTTCAATAAACTTGAAAAAATCTTATATTGCCTTGAAGACCT TGGATCCATATGTGCTTATGAGGCTGCACAAATGTATCACGAAAGTTTCTCCAAAATTATAGGAGGCTGTGAAGTTTACAGAAATGCTTCTCTCAAATGT AAATTTTTTATGGAAAAAGTAATGCAATTAATTGAAGAATCCCTCCATCTCGATGACAAAAAGAATTCGGAGGTTGAATTTGATTATTCAAAGGCAGTAG AGTTGAGACACATATCTCCAAAATTACTTGAACTTATTAAAATCTTCCAGTCACTTGGAGAATCTAGTCAGATGTCGTGTCTCATTTTTGTTGAAAGAAA ACTTACAGCTAAGTTAATGGAAAAATTTGTAAAGAAAGTATCCCATATATCTCATTTCACAGTTTCCTATATAACCGGAGGCAATACTGCAGTTGATGCG CTGTCTCCTAAGAAGCAGAAGGAGATATTGGATTCTTTCCGCTCTGGAGGGGTATTTGGTCATTGCATCATATGCTATGAAACAAGTCCTGATGAAAATC TCTTGATAGGTTATTAATCCTTTTTATGTAGGTCAATCTATTAATTACTACTGATGTAGCTGAGGAAGGAATTGATGTGCCAAACTGCTCTTGTGTGATA CGTTTTGACCTACCCAAGACAGTTCGTAGTTATGTCCAATCTCGGGGAAGATGTAGGCAGCCTAACTCCCAATTTATTGTGATGTTGGAGAGGGGAAACT TGAAGCAAAGAAATCAACTTTTTGACATCATCAGGAGTGAGCGCTCCATGACTAATGCAGCTACTAATAAAGACCAGAATGCTTCTAATTTAAGGGTGTT TACTGTAGGGAAAACAAATGCATACCATGTGAATTCTACTGGAGCATCAGTCACTTTAGATTCTAGTGTTGGACTTATAAATCGATACTGTGAAAAGCTA CCACATGATAAGTACTCCCGTGTGAAGCCCACTTTTGAGTTTCAGCCTATGGGAGGGGGTTACGCATGTAAGTTAACATTGCCGCCTAATGCAGCTTTCC AAATAATAGTTGGTCCCTCAGGAAAAGATGTTCATTTGGCAAGGCATCTTGTATGTTTAGAAGCTTGTAAGAAGCTGCATCAAATGGGCGCCTTAAATGA TCATCTTGTCCCTCTCATTAAAGAAGAGCCTTTAGAAACTGATTGTATTGTGAAAAACAAAGAATCAAGTTCAGGTCCAGGAAGTGGAACCACAAAAAGA AAGGAGTTACATGGCACAACCAGCATTCGTGCGTTATGTGGTACATGGGGAGACAAACTTGATGACACGAAATTTCATGCCTATAAGTTTGATTTCACAT GTAATATTGTCAGTGAAATTTACTCCGGGTTTGTTCTTCTGGTTGAGTCAAAGCTTGATGATGATGTGGGAAATATGGAGGTAGATCTTTATTTAATCTC AAAGATGGTGAAGGCTTCTGTCTATTCACGTGGGCAAGTTGACCTGGATGCTGAACAGATGATGAATGCTAAATGCTTCCAAGAGTTTTTTTTCAATGGT TTGTTTGGGAGGTTGGTTCTTCGGTCTAAATCAGCAGCAAGGGGAGGAAGGGAGTTTTTACTTCAAAAAGACACAAATACGTTATGGAACCCAACATACA TGTTTTTGCTTCTACCACTTGAGAAACTGAATGATTCATGTATGGGATCATTGACAATAAATTGGTCTGGAATCAAATCTTGTGCTTCTGCTATTGGGTT TTTAAGGAAGAAGTTTTTGTTGGTTGCTGGAGATTGTTGCAATGATAGTGATGACACAAAAATCACGTCACCTTGTGATACCAGTCCAATGGAGGTGGAA AGTCAAGATAAAAATAACATTTACTTTGCTAATTGTATGCTTGATGTTAATAATCTAAAAGACGTGGTAGTTTTGGCCATTCATACTGGCAGAATCTATT GTATTGTTGAATTAGATATCAACCTATCCGCTGAAAGTCCCTTCGATGGCAACGATGAAAAGTCTGGGGGTGAACAAATAACATTCGCAGATTACTACAA AAAAAGGTATGGCATTACGCTGAGACATCCAGGGCAACATTTGTTACGTTTGAAGCAAAGTCATAATGCACACAATCTTCTTTTGAACTTCCACGAGGAA GATGGTCGGGACAAGGCATCACAAACTGGGCAGGCACAATCAAAGATGCCTGCCCATGTTTACATTCCACCTGAGCTTCTCTATGTTCTTGATGTTAAAA GAGACGTTTTGAGGTCAATGTACTTGCTACCATCACTGATGCATCATCTTCAATCGTTCATGTTATCCAGTCAGCTTAGAGAAGAGATAGGTGGCCAAAC TAACAATTTCAACATTCCTAGCGCTCTGATTCTAGAAGCACTTACAACTTTAAGATGTGCTGAAAAATGTTCAATGGAACGTCTTGAGTTACTTGGAGAT TCTGTTCTAAAATATGCGGTGAGCTGTCACCTCTTTCTTAAATATCCTAAGAAACATGAAGGACAATTATCTGGCATGCGATCACTGGCTGTCTGTAATT CAACCCTACATAAACGGGCAACAGATCACAAACTGCAGGAGTATATCCGAGACTCAGCATTTGAGCCACGCCGTTGGGTTGCTCCAGGACAGATATCTAT ACACCCCGTTTGTTGTGAATGTGGGTTGGAAACACAAGAAGTGCCTTTAGATGGAAAGTTCCATACTGAAGATCCGAAAGTTGTGGTTGGGAAGTTATGT GACAAGGGTCACCGCTGGATGTGTTCAAAGACCATTGCTGATTGTGCTGAAGCTCTGATAGGAGCATACTATGTGGGTGGTGGATTAATTGCTGCACTTC ACGTGATGAAGTGGCTTGGGATTGATGCTGAACTTGAACCTTCTTTGGTTGATGAAGCCATAACTGCTGCGTCTCTCCATGCATATGTGCCAAAAGTTGA AGAGATTGGAAGCCTTGAAATGAAAATTGGCTATGAATTTTCCATCAAGGGACTCTTACTGGAGGCAATGACACATGTATCCGGGAAAGAAGTTGGGATT AGCTGCTGTTATGAGAGGCTTGAATTTCTTGGTGACTCAGTACTGGACCTGCTTATCACACGCCATCTTTATCAGAGCCACACAGATATTGATCCAGGAG AATTGACTGACTTGCGTTCAGCTTCTGTCAGTAATGAAAATTTTGCTCAAGTTGCTGTAAGAAGAAACCTTCATCTGCACCTTTTGCATGGCTCAGAATT ATTGCTGAGCCAGATCGCAGATTATGTAAAAGTCATTTCTGAATCAGAGAACAATACTAGATCATTCCAAGGCATTAGAGCTCCCAAGCCACTTGGAGAT CTAGTCGAAAGTATTGCTGGGGCTATGCTAATTGATACCAAGCTCAATGTTGACCAAGTGTGGAAAGTTTTCAACCCTTTGCTATCTCCAATTGTTACAC CTGATAAACTTGAACTGCCTCCGTGGCGTGAATTAAATGAATTATGTGACTCTCTCCGGTGTTTTGTGAAAGAAAGTTGTGTAAAGAAAGGACCCATGGT GCATGCCACCCTTAGTGTGCAGTTGCATGATACCTTGTTGGTTCGAGAGGGAAAGGGGCAAAATGCAAAAACTGCAAAAGGAGATGCCGCTCTTCATTTG TTAAAGGACCTTGAGAAGAGAGGAATTTCATATAGCAGTAGCGTCTCAAAGAGAAAACGAGATGCTTCTGGTCTTACTGATGAAAACTCCCTGAAGCCAG TTGCACAGTTAGAATATAAAAGGCAGAAAGTGGATGAAACTAACTTAACTGCGAATGCACATACTGGTTTGCTGCCTCTCAAAGACACTTCCATGGAAGC CTCTAACCTTGGTGCTTCTGTTCCAGGTTTTGCACAATCACTTTTGTTCTGAGTTTGATACTGAGCCTTGTCTTCCCAATGACATAATGTTTACTTCTAG GAGAATTTTTCTTATCGCTTTTGCTTCTTCATTTAGTGCGTAGGTCACTCATTCTCTTCACCCCTTACCTTCTACGTCCCTTTCTTTCTCCATCAACGGA AGCATTCATGGTCTCACATGTTCAGTGTTTCGAGATTTTGAGAAGAAAATGACACGGAAATTGGAGCATACTGAAGTGCTATGGTTATTTACAATCTTGC ATGCAATTATTGTATGCCCCGTTTTAGCAATGCATATACTTCTGGCAGGTTTTAAAATTGTCATGAAGAGCTGAAAATATCAGTTCCAGTTCAGTGAGTC ATCTGAGTTATTTCAGTGATCACTCTCCTGCTTTAACATCTAAAATCAATAATAAATACTGCTGACAGTGTTGTTAGAAGCTTCTTTGGTTGACATTCAA TTCAGATATAATACATCACTATATTCGTTGATTCCTTGCCATTATTTATTCCGGGTCAGGGAGTTAATTTTCAAAACTACCTGTCAATTAACTTCATTGT GGATTCATGTTTATCAGTTATTGGCTCAATTAATATGAAGAAGGGAGGACCTCGGAGCGCACTATATGAACTGTGCAAGAGACTGCAGTGGCCATTGCCT GAATTTGATTCAACAGAATATAAGGATAGAACTCTATTCCAAGGGTGTGAAGGTCTGGAAGGAAGCAAGGGACAAAACTGTTTCGTGTCGAAAATTAGCT TATGCATACCCAATGGCACCGCTCTAGAATGCGAAGGAGAAGCTAGACCTGATAAGAAGACCTCACATGACTCTGCTGCACTTCAAATGCTTTATGAGCT ACAAAGGCTGGGAAGACTTAAGATAACTGATTCACCTACCCTTTCTGTTTCTTCAAAGTAAAAATGATTAGCCTTTGTTTTTACAGGTTTGGATTGAGTA CAAAGGAAGGAACATGAATAACTAGTATCATGACTTTGTGGCCACAAAATACACTATGTTTTGTGCCATTGATCTGAACAATTGTCTCAGATCAATGGTA CAATATCATAGGTTATATTTGTGGGTGCAAACTTGTGGCACTAGTATTAGTATTACAAAATAAGTATAAAAAATGACCCGAGACAAAAATGGAAAAAAGT TTACTTTAGGTGTTTTAATATAATTCCTCTACAAAGAGGGTTAATTTATAAAACTGCATGTTCAATGTGACTTGACTTTCATGCAATAATATTGCATGTC CTTCCTATTAGTAGCATTTCTTAATGTACACTTTGTTTACTTTGATGAATTTTTTTTATCCTAAACCATAAACCTTGGACACATTGCTTTAAATGAAGGA GGCTGATTCGCTTAGCACTTTAATTCGTCC BLAST |
| Tissue | flowers |
| Gene name | LI_gene_21612; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_261894
| Blastp | Endoribonuclease Dicer homolog 3b from Oryza sativa with 51.05% of identity |
|---|---|
| Blastx | Endoribonuclease Dicer homolog 3b from Oryza sativa with 52.44% of identity |
| Eggnog | Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Also processes some mRNAs, and tRNAs when they are encoded in the rRNA operon (By similarity)(COG0571) |
| Kegg | - |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019435266.1) |
| Pfam | Dicer dimerisation domain (PF03368.13) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |