| Id Trinity | FTRINITY_DN51247_c0_g1_i13 |
|---|---|
| Name Transcript | Ll_transcript_261544 |
| Sequence | GTTTACTTCACTTCGCGTAAATGTCTTCTTCTCTCCGCCTTGTCCTCCGTCACATATGCTTCCTCACTCCACCACCACGCTCCGCCATAGCCTTAAGTCT ACTTTACAACCGCCACGCCACGTGTCACTGTATATCTTATTCCAAACCCACACTCCCACTCTCCCACAACAAAGAGAGTAACTACACGCGAGTGGTGAAC AATGACGAACGGTTAAGGGTCCCACAATCCGTTAATCTTGAGAACACAGATGATAGCACCACAATTGCAGCGATTGTGACGTCATTGGGGGGCCCACCAG GTGCTGTAGGAATTGTTCGACTTTCGGGTCCTTCTGCTGTTTCTGTTGTAGCGAGAATCTTTAAGAAGAAGATGAAGAAGAATAAAGAGAAAGAGGTTAC GTGGAAGGTTAAAAGTCATGTGGTGGAGTACGGTGTCGTTTTGGATTTAGATGGGGATGTAATTGATGAGGTTTTGGTTGTGCCGATGCTGGCACCGAGG TCATATACATGTGAAGATGTTGTTGAGATTCAATGTCATGGGAGTGAAGTGTGTTTGCGCCGCGTGCTTAGAGCTTGTTTGGATGCCGGAGCAACACTTG CTCAACCAGGTGAGTTTACGCTTCGCGCTTTTCTAAATGGTCGTTTGGATCTCTCGCAAGCTGAAAATGTTGCAAGGTTGATTTCTGCCAAATCTGTGGC TGCGGCAGATGCAGCACTCGCGGGAATCCAGGGTGGTTTTTCTTCTCTTGTGAAATCGTTGAGAATACAGTGCATTGAGTTGCTCACTGAGATTGAAGCT CGTTTAGATTTTGATGATGAGATGCCACCTCTTGATTTGAACCTCGTTATGGATAAAATACATACCATGTCACGAGATGTTGATAATGCATTGGAGACAG CAAATTATGACAAACTTCTCCAATCTGGATTACAGGTATCATACTATCATCTCCAACACGGCTCTGTAAGAAGTGCTTTTTTTTTGTTTATTGAAGTACC CCTAGTCCATAGTTGGCTGTATTAGGTACAAAACTTTTCCCTTTGAACCAAAAAAAAAATCCATGCATGATTGCAAGTTCTTTTTTATATGAATTGCATG ATGTCTGTTCTTGTATTTTATATTGTTGATATCAATATAAACTTCTTGCAGATAGCAATAGTTGGCCGTCCAAATGTGGGCAAGTCAAGCCTTCTTAATG CGTGGAGCAAAGTATGTCACAGTCATTTTACGTATTCAATTATTTAATGTGATATTTTGTTCATTTATTGAATATTTTGTTTAGATATTAACCTTGGTGT AAGGAGATTGAAACCATTCACATAGTTGCTATAATTGGCTTCTGAAGTCTGCAGTGTAGGAATTGATAAGTGCTTGATAATCACCTCAGTATTTTGAATT TTTTATTATTTAACTTATTGAGCATGGTGTTCTTGTAGCATGCAGAGTGAGAGGGCAATAGTTACTGAAATTGCTGGAACCACTCGTGATGTGATCGAAG CAAGTGTCAGCGTAAATGGCATTCCTGTAACCCTTCTTGATACTGCAGGCATCAGAGACACTGATGACATCGTGGAAAAGATTGGCGTAGAGAGGTCTGA AGCGGTTGCTAAGGGTGCTGATGTAATTATCATGACTGTCAGTGCTGTTGAAGGGTGGACTTCTGAAGACACCAAACTACTTGAAAGGATTCAATTATCT AAGAAATCAACCGGATCTTCCACTCCAGCTATCCTTGTGGTGAACAAGATTGATTGTGGTCCTTATGCTGAGACTGAATGGGACGAAGAATGTACCAGTC TCAATTTCTTCAGTAAACATGTGTTTACATGTGCTGTTACTGGTCAAGGCTTACAAGACTTAGAGAAGGCAGTATTAGACATTGTGGGTCTTGATGCCAT TCCTACCGGTGGTCGCAGATGGACTGTCAATCAGAGACAATGTGAACAACTTGTACGGACGAAGGAAGCGCTTGGAAGGTTAGAATCATCAATAAAGGAT GAACTACCTCTGGATTTTTGGACAATTGATTTGAGGGATGCTGCATTAGCCCTTGGACAGATAAGTGGAGAAGATATATCAGAGGAGGTTTTATCAAATA TATTTGGCAAGTTCTGTATTGGCAAATAGAAGGAACAAGCCATATATATGTATGTGCTTGATGTTCTGCATATTTTCCATTCATTTTTCAGCCATACATG TCATGCTAAATAACATTAAGGCCAGTTGCTTTCTCTCCACCATTTATTTAATGATATTGGTGATCGGTTCTTTATACATTTCTTGTTTTGTTACTTACTC ATCACCTTTTTTGGTTTGGATCCAAAATGAGTGCTCAGAGGAAAAGGAATTTGGTATCCTTAAGCAAAGGCTCGTGGCAAAGATACTCTATCCTTTTTAT TTGGTGCAAAGAAAGGGTTAAAACTCCATTTCAAGATTTAAGGAACAGGCCAATACATTGAAATAATGGACTCGAGCATCCATTTTTTAGTGCAATGGCA TGTAAACATCAGATTTGGCAAATTATATACTTTATACAAAACTATTCCCCTTTTAAGATCAGTAAAATAGTGATGCCATAATTCAATGAAGACTTTCCAA TCCATCTCCATCCTAAAATGTCATACATTTATATTGTGGAAGATTAAGACTCCTCTCCATTACCAGAGACAGCGGTTATTTTTTGTAGTCTATTTTTAAG GCTAAAATTGTAAATTTAATGTAGATTGAAGGTCATAAATGTCATTATTTTTTTGGTTTGGAATACAATTTCTCATAACTGTCATCTCTAGTAATGGAGA GAAGTTTATCTCATTGTGGCATATTAGGGGTGAGCAAGACTTGACCCTACTTGCTCACCTGGTTTGGTCTGATCATGAATGGATCTGAGTAGAGTTGAGT TTCATTGGTCTCTATTTAGGGTTAGGTATGAGATAAACATGACACTTTTCATCTCAGTTATTTACTCATCATGTTTGTATGTCATATTCTATTCTTTTTG GTTGAAAATATCACTGATTTGTTAAAAAA BLAST |
| Tissue | flowers |
| Gene name | LI_gene_21662; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_261544
| Blastp | tRNA modification GTPase MnmE from Nostoc with 45.89% of identity |
|---|---|
| Blastx | tRNA modification GTPase MnmE from Synechococcus with 45.11% of identity |
| Eggnog | Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34 (By similarity)(COG0486) |
| Kegg | Link to kegg annotations (all4677) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019438541.1) |
| Pfam | 50S ribosome-binding GTPase (PF01926.22) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |