| Id Trinity | FTRINITY_DN51307_c0_g2_i5 |
|---|---|
| Name Transcript | Ll_transcript_11855 |
| Sequence | CCTTATTTGGTGCTTCCTCTGAGTTAGGGTTTTGCCGCAATGGGAGGTTCTCGAGTTCAAGTCAATAAGGCTCACAAGACTCGTTTCTCTTCTAAATCTT CTCGCAATCTTCACAAAACTTCTGCCAATGATAGAATCACAAATGCAAAATCAGAACGCAATTTCGCCAAAGGAGCTCGTGCAGCTCGAGTTCAGAGAAA TAAAATGATACGCAAGCAGAAAAAGGATGCTGTTTTGAAAGAAAGAAGAGAACTCACTGGATCCAAAAGTCCTCCTCGAGTAATCGTTCTTTTCGGGCTT TCTGCTGCTGTGGATTTAGATTCACTTTCTGATGACCTCACATCGTTGCTATCTAAACAAACTTCTGGGGTGCTGCCTAAGACACTTGCTTCTCCTGAAT ATAGGACAAGAACAACGGTACTAAAAGCACCCCATGGTGATCTATTATCATGCATGGAAATGGCCAAGGTTGCTGATCTACTAGCTTTTGTAACCTCAGC AAGTTATGCATGTGAAGGAACTGATTCTTGCTATATTGATTCATTTGGAGATCAATGCCTTTCTGTGTTTAGGTCCCTTGGTTTACCAAGCACTGTTGTC TTTATTCGTGATCTGCCCACTGAGCTTAAACAACGAAATGAACTAAAGAAGATGTGCACATCAACTCTTGCCTCTGAATTTCCTGAGGATTGTAAATTTT ATCCAGCTGATACGAAAGATGAGCTGCACAAGTTCTTGTGGCTTTTTAAAGAGCAAAGGCTTAAAGTTCCTCATTGGAGAACTCAACGACCTTACATCAT GGCCCATAAGGTTGATGCAGTACATGATGACCATTCAGGAAAATCCACCCTCCTTCTCACTGGTTACCTCCGTGCTCGTAGCCTCTCAGTGAATCAACTG GTTCATGTTTCAGGTGCAGGAGATTTCCAATTGAGTAAAATAGAAATTCTGAAAGACCCTTTTCCTCTGAATTCAAAGAAGAATGAGGATTTAATGGATT CAGATGAAACACATGACTCTGAGGCCATTGGGTCTCTGGTTCCAGATCCTCAAAACCAGGAACCTTTAGTTGTTGAGAACGATCCTGATCCTCTTGCTGG AGAGCAGACATGGCCAACAGAGGCTGAAATTGCTAAGGCTGATGAAGATCAAAAGCTAAAGAAGATAAGAAAGAAGATTCTTCCCCGAGGCACTTCAGAA TATCAGGCAGCCTGGATTGTTGATGATTCTGATAAGGAGTCATCAGATGGTGAATATGATTATGATGATGGTATGGTGTTGGATGAAGGGGGAGATGTTC AGGAGGGAAATGAGTATTTAGACATTGATGGTGATGGGACTTCAATTAAATTTGGAGATTCTGAGGATGAATTGGACAATGATTCAGTGATGATGGAAGC AGATAGCTTGACTAGGGAGAAGATACAAGATGAACTTAAGGAACTTAAGGAAAAACATGCTGCAGATGAGGAATATCCAGATGAAGTGGATGTACCTTTG GATGTTCCTGCTAGGAAGCGCTTTGCAAAATATAGAGGACTTAAGTCCTTTAGGACTTCTTCATGGGATCCAAAAGTATGTGTGTATGTTTTTGGAGATT CTTTATAGTAAGCCATGATCTCTGACAATAAAACTCTGACATTCCTTATAATATCAGGAATCTCTACCCCAAGATTATGCCAGAATTTTTCAATTTGACA ACATTAAAAGAACGCAAAAACACATTCTTGCTAAAGCTCTAGAAATGGAGCAAGAAATCAGAGATAGTTGTATTCCAGTTGGCTCATATGCTAGGCTGCA TATCAAGGAAGTCCCCAGTGCTGTTGCTTCAAAGTTATCTGTGCTCGGAAAGACAATCCCAATTACAGCATGTGGCTTGTTTCAGCACGAGTCTAAAATA TCTGTTCTTCATTTCAGTGTGAAGAAGTACGAAACATATGATGCACCTATCAAATCCAAGGAAGAGTTGATATTTCATGTTGGGTTTCGGCAATTTGTTG GCAGGCCACTTTTCTCCAGTGAGTTTATAAATACAGACAAGAACAAGATGGAGAGGTTTCTCCATGCTGGGCGCTTTTCAGTTGCATCAATCTATGCACC GATTTCATTTCCTCATCTTCCCGCGATAATCCTAAAGAGAGCTGGAGAGGATGCTCCACCTGCAGTGGCTGCTGTTGGCTCACTGAAAACCATTGATCCA GACAGGATAATCCTTAAGCGGTCTATTTTGACAGGTTACCCCCAAAGAGTATCAAAACGTAAAGCTGCTGTGAAATACATGTTCCATAATCCAGAGGATG TTAAATGGTTTAAGCCTGTAGAACTTTATACCAAATGTGGTCTTCGTGGGAGGATTAAAGAACCTGTTGGCACACACGGAGCAATGAAGTGCCTTCTGAA TGGGGTTCTTGAACAACGAGATACTGTATGCATGAATTTATTCAAACGTTCATACCCAAAGTGGACAAACCATCATTTCCCACTATCAGACATTTGATGT GTAATTGGTGAATGATGGCAAATTCTAATATTCATTGGGAATGAAGCTCTGGTTCAGATTCACTTCCTTCTATGGAGGATGCACTTTTGTACTCTTCTTT TGGGCACACTCTTAGATCCCCTTGCTTCTTTGTGTGCTCACTTTTTTGACACAAGATAATTTATCAAATTTCAGATTTTGTTTATTTTTTTTGAATTTAT TTTAAATGTAGTATTTGCATACAAAAATATTGAGCCGTAGGTGGTGTTAAAATACACATTATGTTTCACTACTGTGCTGACATTTGACAGACATTAATGC GTCTACCTGTATTTATTTTTGTTGGAGATTAAATTTAATATTATTCCATAAGGCCGTGCTAAGGATGATTATGGTTGCTACTTTTTATGTATGCATTGAC AATGTAAGTGTTGTTTACACTATCAACAAATCTTCACCATCGATTTGTTAACCATTATTGACTTTTAAATGGATAGATT BLAST |
| Tissue | flowers |
| Gene name | LI_gene_21785; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_11855
| Blastp | Pre-rRNA-processing protein TSR1 homolog from Homo with 35.06% of identity |
|---|---|
| Blastx | Pre-rRNA-processing protein TSR1 homolog from Xenopus with 47.6% of identity |
| Eggnog | TSR1, 20S rRNA accumulation, homolog (S. cerevisiae)(COG5177) |
| Kegg | Link to kegg annotations (55720) |
| CantataDB | Link to cantataDB annotations (CNT0000215) |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019414661.1) |
| Pfam | AARP2CN (NUC121) domain (PF08142.11) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |