| Id Trinity | FTRINITY_DN51343_c0_g1_i3 |
|---|---|
| Name Transcript | Ll_transcript_12139 |
| Sequence | TTTTCTCTTTTTCTCATACTAAATAATACAAAAATCTACTCTCTTTTGTTTGCACACTTTTCTTTCTCATGCTTCTCTTTCTCCATTTTCTCTTCTCATT TTCTACTATTCAATCAAATAAAGCTTGTTATGCATATTGGGCCTGCTCATTAGGACCAAATTTTAAGCCCCATTATTTTGATGGAGGTTGAAGGCTTGAA GCTACAAAAGTACAAAGCGATAAACAGAAAAACGGCATTGAACAAACGAAACGCAGTGGATAACATAACAAGGAAACAACACTGAACCAAAAACACAGTA ACACCACCACGAACGAATTCACAGTTCCAGAAATTTAAAATTATTATTTATCATAAAAATTTGTTGTTATTGAGAATCAAATCCAACAAATGCTAAATGG CAACGACGCTTTTCACTTTCCATCTCTCTCGCACTTTCCGCACATCACTTTTTTCCGCTTCATCCCTTTCCACTCTTCGTGACGTCACTTTCCGACGCAA CTTCCCCCGCCGTCTCTCCTTCTTCGCCACCACTTTTCCCCGCCGCTTCTCTGCTATCACCACCGCTTCAATCTCCCGAGAGTTGGATAATGGAATCGGA GCAGTGGATGAAAGATATGATGTGATTGTAGTTGGAGGTGGACACGCAGGGTGCGAAGCAGCACTTGCTTCTGCACGTTTGGGGGCAAGGACTCTTCTTC TTACACTCAATATTGATCGTATTGCATGGCAGCCTTGCAATCCAGCAGTTGGTGGGCCTGCAAAGTCCCAACTGGTTCATGAGGTGGATGCACTAGGTGG TGAAATTGGGAAGATTGCTGATAGATGTTACTTACAAAAACGTATACTCAATGTCTCAAGAGGTCCTGCAGTTCGTGCACTACGTGCTCAGACCGACAAA AGGGAGTATGCCTTGGAAATGAAAAATGTAGTGGAAAGCACTCCAAACCTTTCTATCCGAGAGGCTATGGTCACAGATCTTTTACTGGGGAAGAATGATA ATGTGGAAGGTGTTTGTACTTTTTTCGGAATGAAATTCTATGCTCCATCTGTTATTCTCACAACAGGAACTTTTATGAGCGGCAAAATTTGGGTTGGCAG AACTTCTATGCCTGCAGGAAGAGCTGGCGAGTCTGCTTCACATGGATTAACTGAGAACTTACAGCAACTTGGTTTTGAAACTGATCGGTTGAAAACTGGT ACTCCAGCCCGGGTGGATATTCGCACTGTAAATTTCTCAGTATTAGAACCTCAGCATGGAGATGAAGAGGTTCTTCCATTTAAACTTATGTGTAGGTTCA TTAGATTTGGTTTTGATTCAAATCAAACTTATGGTTTGCAAATGATTTTGTCTGGACTCGTTTTTAGTGTTATTGTCAGTTTTCTATTTAAGTTAATCTG TTAGTGATCTCAGTGCAGCTAAAATGCCATTGTAATTTGCATCTTCGTGAATATATGTCTATTAGCCATGACATGGACAAGGTCCCAGATATTTTTAAAG TTTATTTTGTGGTTGCCTTTGTTTAATTCTATTTAGCATAGATAACAATGCAATAGTTTTAGTTCCAGTAACCTACCAATGTTTTGACACAATAAATAAA ATATAATTTTGCTTTTCTTCCAGTGATGAATGATAATTTTTACTGTTAGCTGTCTGACTTAGAAAATTCTCTTCTGTATTTAAAAATAGTGTTTCCTCAG TGTATCTTCATAATTGGCAGGTCGGCTGGTTTAGTTTTGATCCTGATGTCCATATCGAACGAGAACAGATGTGCTGCTACCTGACTCGCACTACAAGCAT TACTCACCAGATAGTAAGAGAGAACTTACATGAAACTCCCACCTATGGAGGATGGATTGAAGCTAAAGGACCTAGATACTGCCCTTCTATCGAAGATAAG ATTGTGAGATTCCAAGATAAAGAGTCTCATCAAATATTTCTTGAACCCGAGGGTCGCCATGTGCCTGATCTCTATGTGCAAGGGTTCTCCACGGGTTTGC CAGAGAGACTGCAGTTACCTTTGCTGAGAACTTTGCCTGGACTTGAGAACTGTTCAATGTTGAGGCCTGCATATGCTGTGGAGTATGACTATTTACCTGC TCATCAATGTGCTAGGTCTCTTATGACAAAGAAAATACAAGGGTTGTTCCTCTCTGGTCAGATAAATGGAACTACAGGGTATGAAGAAGCTGCAGCACAG GGCATCCTTTCTGGCATCAATGCTGCTAGACATGCAGATGGTAAGCCGCTCATTGTTCTTGAGAGGGAGAGCAGTTACATAGGAACATTGATTGATGATC TAGTTACCAAGGACCTTCGAGAGCCTTACCGCATGTTAACAAGCCGCTCAGAGCATCGGTTACTGTTGAGATCTGATAATGCCGATAGCCGTCTTACTCC TTTGGGTCGTGAAATTGGGTTGATAGATGATAGACGCTGGAAACTGTACCAGGAGAAGCAGGATCGGATTTCTGAGGAAAAGAAGCGATTGAAAAGTGTC AAAATTTCAGGAGGAGATTTGGCTGCTGAAGTTACTCGTCTGTCTGGTCAGCCGGTGAAGAATGCTTCCACATTGGAAAGTCTTCTTAAGAAACCACATA TACAGTATGAAGTTCTTGATAAGCATGGTTTTAGTAACAAAAACTTGTCGAGAATGGAGAAAGAATGTGTTGAGATCGACATTAAGTATGAAGGTTTCAT CTTGCGCGAGCAAATCCTACTAAAACAGATGGTTACTAAACAACATAGACCACTTCCTGAAGACTTGGATTACTATGCAATGACGACTTTATCTCTTGAA GCACGTGAAAAACTTTCTAAGGTTAGGCCACAAACCATTGGTCAGGCAAGCAGAGTTGGTGGGGTGAGCCCAGCTGATATCACTGCTCTACTCATTGTGA TAGAATCCAATAGGAGGAAAGCTCAAGAACAGAGGAGGCACAAAATGTTGAATGCCATTCGAACAGATAACCAAGATGAGGTGCCTGAAGTTTCTTTGAC TGAAACAGTCAGTACTGGATAAGTTTTCATCTCATCCCACCATTCTGTCAATTTTGGAATTTAGCTGTGCCATATTGTATATGTCATGTGAAGACTACAA AATCCTAGATTAATAGATTAACAGAGAGAATGGAAAAGAAATTGTGTGGCTTTAATATTTTGTTGTTGTCAATTTTATCCAATTTATGTAATGCTATTAA ACAAATTATTTATTGAGGATATATAAATACTAGTTAAGCTTTCTTTGGAAGAGCAGAGTGACTATAGGGAGAAAATGGTAAGAGAGAAGTTGAGAAAGAC ATAATTTCTCCTATTTGTTTGTGAAGCGAGAAAGGGGCTAGATAGTAAAAGTTGTATAAGACTTGCGATAAAAAATTTCTTCTGTAGTTTGTCTACAGTG AAGAAGGAAATATAATTTTGAATAAAATGTCAAAAATATATTTCGATTCTTTTTATTTTCACTGCTTGATAGTTTTGAATGTTAGGAATATAAATGAGTC TGTTTTGTATGTAGAAATATATTAGCAT BLAST |
| Tissue | flowers |
| Gene name | LI_gene_21859; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_12139
| Blastp | tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG from Synechococcus with 65.45% of identity |
|---|---|
| Blastx | tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG from Thermosynechococcus with 65.67% of identity |
| Eggnog | NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34 (By similarity)(COG0445) |
| Kegg | Link to kegg annotations (CYB_2823) |
| CantataDB | Link to cantataDB annotations (CNT0001314) |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019464324.1) |
| Pfam | Glucose inhibited division protein A (PF01134.21) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |