Ll_transcript_27461

• Id Trinity: FTRINITY_DN51566_c0_g1_i4
• Name Transcript: Ll_transcript_27461
• Sequence: CAGAAATTATAAGGACGAAGACCTAAATTGATAAAATAAAATTAGCCGAACTATTTTTGAAGTAGTGCTAGTAGCCTCTCCAATGGCGGAACACAACGAA GCCACGAATGACATAACCGAACCCGAGTTGACACATGTTGCTGAAAACCCCGCCATCAACGAAAACGACGCTCCATGCGACTTAAACGGCGTGCTACAAT CTCTGCCTTCCAACGTCATCAATGACTTGTTATCCTTCGGGATATGTGTCCGATGCATTTTTCGGGTATTTGGTGTCAGAGGACGCATCTATGCCTCACC AGATTTGGCAGTGAACAATCTGAAGGATAATTTGAAGAGCTCTGAAAACTCAAATACTGCAAAGGAAACTAAGCTTTGCAGGCTTTGCTTAGGGATACTG CAGTTTAGATTTGTTGATGAGAAGGAAGTGGTGGTGAAAAAAGATAGTGTTGATGATATGGCTGTACTAATTGCTGAAATGGTAAAGAAGGAGGGTTATC AGATTGATGGTTTTTCCTTTGAAGTTTCTGTCCCACCTGTTCTACTTGAAAATGATAACTCGTTTTGGTCATATATGAAATCAAAATTTGGATCTGAACC TTGGTTCCAAGAAAAGTTACATACTGAACGTATCTCTACAAAGGATGCATTAAAATTTTCACTAGTATCTCCTCTTGAAAATCTTCTGAAATCAAGTTTT GCAGGACTGTAAATCAAATATGAGTTCTTTCCGCATTCGTTTAACATACAATCACACTAAAGGATTGAATGGGACTGAGAAATGTTCAGACAACGATGAG CGTTCCAAGAGAAGAAAAACAGGTGAATCCAATTTAGTTGGAGAAAAGCCTTTTAGCAGTTCGGTAGAAAATGAATCCTCTGACTGGTGTGAATCCTTGC AAGAAATGGCAAATGAACCCTGTCATTTTACCTGCGTTTTCTGCAGAGAACCTTACTATTTTGGTGGAAGATACCTTAAGTATTCACGAAATGTGAGTCA GACACGCTGGATCATTGATGATGAGAGAATGGGTGAAGCATCAGTTGAGGAAATAATTGGCGGAAACATCCTCCAGGCATCCCGTGGTGATAGTTTTAAG TTTCACGCTGCCGGCAGAGAAGATATCGATGTACGTATGCTGGGCCCAGGCAGGCCTTTCCTTGTTGAGGTGCAAAACGCACGACTTCTCCCGTCTGAAC TGTTCGCCAAAGATATAGAGAAATTGATAAATAACGTGGAAAATAAATTGGTTAGGGTGAGAAATCTGAATCTCGTTGGTAGTCATGGCTGGAACCTTAT GCGTGAAGGTGAAGCAGAGAAGCAGAAGCAATATGCTGCTCTAGTGTGGATTTCTCGCCCTTTGAAGGATGAAGATTTGCAACATATTTCTTCACTCAAG GATTTGAAAGTTTTGCAGAGAACCCCTATAAGGGTGCTACACCGTCGCAGTCCTTTGGAGCGTGAAAAGATTATCCACTGGATGAAAGTGGAGACAATTG CTGGAAGTTCGCAATATTTTCTTTTGCATCTATGTACACAGGCTGGGACCTACATCAAGGAATTTGTTCATGGGGATCTTGGTCGAACCCAACCTAGCAT TGGATCAATTTTGGACTGTAGAGCTGAAATTTTGCAACTTGATGTTACAGACATCAAAATGGACTGTTTCCTGGCCTAGTAAGGTTATCTCCTGTTTTCA GTATTTAGTTGATTGATTTTGGAATGAGCAGTGCTCAGATGAAAGACACTTGAGTATCTTCAACTTGAGCTTTGTTTATTTAGTATCTAAAAGATGTTCT CAGAATTAGTAACTTGAGCCTCTTATTAAGGTCTCTATGCACACTTGAGGAGTCCTGAAGAAGAACAAAAGCAGTCATAACTTTAATTTTATTATAGTGA TTGAGAATAGATTTTGATAGTGAAGCCTCAAGAATGGTTCTTAAGTTTTTCATGTCTCAAATGCAGACTTGCTTTTAAATGGTTAAGCCCTGTAGAGAAC CTGCTGGAGTAAATTGATGCCTTTTAAACAGAAAATTGTTCACCCAAAAAATATAACAGTTCAAACACCAAAGGCTATACCCCCTTGAGATCGGGGTTAG TTAAAGGAACATGTGTGAAACCTTCAACTTAATTAATCAATTAAGTTGAAGGTTAAGGTTTCTAAGTCTCCTACTTGCAGAGGAGAAAATGAGGGTGGGG ACAAATGGATATATAGACAAGAGGAAATTCAATAAACATGAAGTTGATAAATTTACATATATTGATATTAATATTATTGCAATCTTACAGTGCTCTTTAT ATACAGGATAAAAACATAATGATGCAAGTTTATAACATTATTTCTAGCACCATGTTAATCAAAATGAATAAATAACTATTGTATAAATTTAAAAAAATTA CAATAGGATCACACAATGAGTGATGACATATTATATTCATAACGAGATCTGTTAAAAGAAAAAAAAAAGGAACATATTAGTAGCCGTTTTCTTCATTTAT TGTGATTGTATACCAATTTTTTATATTTATCATGTATAATGTAAATATTTTCAGTATGAGAATATATTACTTAGCAATCATATATATTTTTTTAGTTATA TCAAACGACTATAAC
• Tissue: flowers
• Gene name: LI_gene_22318;
• Additional information: details;

Expression of Ll_transcript_27461

FPKM

• FPAB: 1.3
• FPNAB: 0.1
• LF1: 0.1
• LF2: 0.1
• LF3: 0.5
• LF4: 0.1
• UF1: 0
• UF2: 0.3
• UF3: 0.2
• UF4: 0

Labels

• FPAB: abscising flower pedicels
• FPNAB   : non-abscising flower pedicels
• LF1: lower flowers stage 1
• LF2: lower flowers stage 2
• LF3: lower flowers stage 3
• LF4: lower flowers stage 4
• UF1: upper flowers stage 1
• UF2: upper flowers stage 2
• UF3: upper flowers stage 3
• UF4: upper flowers stage 4

Annotations of Ll_transcript_27461

• Blastp: Putative tRNA pseudouridine synthase Pus10 from Homo with 48.1% of identity
• Blastx: Putative tRNA pseudouridine synthase Pus10 from Homo with 48.1% of identity
• Eggnog: Responsible for synthesis of pseudouridine from uracil- 54 and uracil-55 in the psi GC loop of transfer RNAs (By similarity)(COG1258)
• Kegg: Link to kegg annotations (150962)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019449496.1)
• Pfam: -
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;