| Id Trinity | FTRINITY_DN51566_c0_g1_i6 |
|---|---|
| Name Transcript | Ll_transcript_27463 |
| Sequence | CAGAAATTATAAGGACGAAGACCTAAATTGATAAAATAAAATTAGCCGAACTATTTTTGAAGTAGTGCTAGTAGCCTCTCCAATGGCGGAACACAACGAA GCCACGAATGACATAACCGAACCCGAGTTGACACATGTTGCTGAAAACCCCGCCATCAACGAAAACGACGCTCCATGCGACTTAAACGGCGTGCTACAAT CTCTGCCTTCCAACGTCATCAATGACTTGTTATCCTTCGGGATATGTGTCCGATGCATTTTTCGGGTATTTGGTGTCAGAGGACGCATCTATGCCTCACC AGATTTGGCAGTGAACAATCTGAAGGATAATTTGAAGAGCTCTGAAAACTCAAATACTGCAAAGGAAACTAAGCTTTGCAGGCTTTGCTTAGGGATACTG CAGTTTAGATTTGTTGATGAGAAGGAAGTGGTGGTGAAAAAAGATAGTGTTGATGATATGGCTGTACTAATTGCTGAAATGGTAAAGAAGGAGGGTTATC AGATTGATGGTTTTTCCTTTGAAGTTTCTGTCCCACCTGTTCTACTTGAAAATGATAACTCGTTTTGGTCATATATGAAATCAAAATTTGGATCTGAACC TTGGTTCCAAGAAAAGTTACATACTGAACGTATCTCTACAAAGGATGCATTAAAATTTTCACTAGTATCTCCTCTTGAAAATCTTCTGGACTGTAAATCA AATATGAGTTCTTTCCGCATTCGTTTAACATACAATCACACTAAAGGATTGAATGGGACTGAGAAATGTTCAGACAACGATGAGCGTTCCAAGAGAAGAA AAACAGGTGAATCCAATTTAGTTGGAGAAAAGCCTTTTAGCAGTTCGGTAGAAAATGAATCCTCTGACTGGTGTGAATCCTTGCAAGAAATGGCAAATGA ACCCTGTCATTTTACCTGCGTTTTCTGCAGAGAACCTTACTATTTTGGTGGAAGATACCTTAAGTATTCACGAAATGTGAGTCAGACACGCTGGATCATT GATGATGAGAGAATGGGTGAAGCATCAGTTGAGGAAATAATTGGCGGAAACATCCTCCAGGCATCCCGTGGTGATAGTTTTAAGTTTCACGCTGCCGGCA GAGAAGATATCGATGTACGTATGCTGGGCCCAGGCAGGCCTTTCCTTGTTGAGGTGCAAAACGCACGACTTCTCCCGTCTGAACTGTTCGCCAAAGATAT AGAGAAATTGATAAATAACGTGGAAAATAAATTGGTTAGGGTGAGAAATCTGAATCTCGTTGGTAGTCATGGCTGGAACCTTATGCGTGAAGGTGAAGCA GAGAAGCAGAAGCAATATGCTGCTCTAGTGTGGATTTCTCGCCCTTTGAAGGATGAAGATTTGCAACATATTTCTTCACTCAAGGATTTGAAAGTTTTGC AGAGAACCCCTATAAGGGTGCTACACCGTCGCAGTCCTTTGGAGCGTGAAAAGATTATCCACTGGATGAAAGTGGAGACAATTGCTGGAAGTTCGCAATA TTTTCTTTTGCATCTATGTACACAGGCTGGGACCTACATCAAGGAATTTGTTCATGGGGATCTTGGTCGAACCCAACCTAGCATTGGATCAATTTTGGAC TGTAGAGCTGAAATTTTGCAACTTGATGTTACAGACATCAAAATGGACTGTTTCCTGGCCTAGTAAGGTTATCTCCTGTTTTCAGTATTTAGTTGATTGA TTTTGGAATGAGCAGTGCTCAGATGAAAGACACTTGAGTATCTTCAACTTGAGCTTTGTTTATTTAGTATCTAAAAGATGTTCTCAGAATTAGTAACTTG AGCCTCTTATTAAGGTCTCTATGCACACTTGAGGAGTCCTGAAGAAGAACAAAAGCAGTCATAACTTTAATTTTATTATAGTGATTGAGAATAGATTTTG ATAGTGAAGCCTCAAGAATGGTTCTTAAGTTTTTCATGTCTCAAATGCAGACTTGCTTTTAAATGGTTAAGCCCTGTAGAGAACCTGCTGGAGTAAATTG ATGCCTTTTAAACAGAAAATTGTTCACCCAAAAAATATAACAGTTCAAACACCAAAGGCTATACCCCCTTGAGATCGGGGTTAGTTAAAGGAACATGTGT GAAACCTTCAACTTAATTAATCAATTAAGTTGAAGGTTAAGGTTTCTAAGTCTCCTACTTGCAGAGGAGAAAATGAGGGTGGGGACAAATGGATATATAG ACAAGAGGAAATTCAATAAACATGAAGTTGATAAATTTACATATATTGATATTAATATTATTGCAATCTTACAGTGCTCTTTATATACAGGATAAAAACA TAATGATGCAAGTTTATAACATTATTTCTAGCACCATGTTAATCAAAATGAATAAATAACTATTGTATAAATTTAAAAAAATTACAATAGGATCACACAA TGAGTGATGACATATTATATTCATAACGAGATCTGTTAAAAGAAAAAAAAAAGGAACATATTAGTAGCCGTTTTCTTCATTTATTGTGATTGTATACCAA TTTTTTATATTTATCATGTATAATGTAAATATTTTCAGTATGAGAATATATTACTTAGCAATCATATATATTTTTTTAGTTATATCAAACGACTATAAC BLAST |
| Tissue | flowers |
| Gene name | LI_gene_22318; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_27463
| Blastp | Putative tRNA pseudouridine synthase Pus10 from Homo with 33.52% of identity |
|---|---|
| Blastx | Putative tRNA pseudouridine synthase Pus10 from Homo with 35.27% of identity |
| Eggnog | Responsible for synthesis of pseudouridine from uracil- 54 and uracil-55 in the psi GC loop of transfer RNAs (By similarity)(COG1258) |
| Kegg | Link to kegg annotations (150962) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019449496.1) |
| Pfam | - |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |