Id Trinity | FTRINITY_DN51614_c0_g1_i3 |
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Name Transcript | Ll_transcript_152406 |
Sequence | ATAAAAGTCTCATTAATATGATATGTTATCTTAATGTTGAGTATTTTTTATTGAACTTTTTCAAAAATCTAATCACATAATTATACAATGGTATGGGCCT AAAATTGTCTTTAGCCCAAACCCGAAACCGAATCTAACCCGACCCGGACATCCATTTCTCTCTCCCACTATTCATTACTATCGCTCCACGCTAACCGGTA CTTCACCACCGTGCACGGCCACATAACCCCGCCGTGAAAAGCCGCCTACACTCCACCACTACTTCCACCCACGCTGCCGTCTTCCGCCACCTGCAAGCTG ATGAAGAAGCTCGATTTCAGTCGCCATTACGGCTTCCTGGCCTCCAACCTTAGAATCTCCGCCAAAACACCAACCATGGAGATGGAGTCCCAGATTCTCC AATACAGCAAAGATGGCTCTCTCTCTCAAGCCCTCAAACTCCTCAACACCCTCAACAAAAACTTCTCTTCCCATCTCACTGTTAAACCAGTACTATACGC TTCCCTCCTCCAAACCTGCATCAAAACCACTTCCTTCACCCATGGTACCCAACTCCACGCCCATGTCCTCAAATCAGGTCTTCAAAATGACCGCTTCGTT GGTAACAGCTTGCTCTCCCTCTACTTTAAACTATGTCCCCGTATCGGCGAAGCTCGTAGAGTCTTCGATAAGCTTTATGTAAAAGACGTGATATCTTGGA CTTCAATGATTTCTGGGTATGTTAAGGTTGGTGAACACCAGGAATCACTTCAATTGTTCTTTGAAATGGTGGATTTGGGTGTTGAGCCTAATGGGTTCAC TTTGTCCTCTGTGATTAAGGCTTGTTCTGAACTTGGGTACTTGAAACTTGGTAGATGTTTTCATGGGGTGGTTATAAATCATGGGTTTGACAACAATCAT GTTATTATAAGTGCTTTAATTGATATGTATGGGAGGAATCATGAGGTGGGGGATGGAAGGAAGTTGTTTGATGAATTGCCTGAACCAGATGCTGTGTGTT GGACATCAGTTATTTCAGCGTTTGCGAGGAATGATATGTTTAAGGAAGCTTTGGATTTTTTTTATGTTATGCATATGGATCATGGGTTGGAGCCAGATGG GTTTACTTTTGGGACATTGTTGGCTGCTTGTGCGAATTTGGGGTGGTTGAGGCAGGGGAAAGAGGTGCATGCCAAAGTTGTTACTTCTGGGATATGTGGG AATGTGGTTGTCGATAGTAGTCTCTTAGATATGTATGGAAAATGTGGCTTGGTTCAATGGTCTAGGAGTATTTTTGATAGGATGAGCTTTAAGAATTCAG TGTCTTGGAGTGCTATGCTTGGTGTGTATTGCCAAAATGGAGAATGTGAAACTGTGCTGAATCTTGTTAGGGAGAGGAGAGTTGCAGATCTTTACAGCTT TGGGACTATTATTCGTGCATGTTCAGGGCTGGCTGCTGTTAGACAAGGGAAAGAGGTTCATTGTCAGTATGTAAGAAAGGGTGGTTGGGGAGATGTTATA GTAGAGTCTGCCATGGTTGATCTATACGCGAAATGTGGGTGCGTTGATTTTGCACACAGATTGTTCTTGAATATGCAAGTTAAAAATTTGATAACGTGGA ACTCAATGATTGGTGGGTTTGCACAGAATGGAAGAGGGGAAGAAGCACTGGCCTTATTTGAGGATATGATCAAAGAGGGGGTGAAGCCTGACTATATTAC TTTTATTAATGTTCTTTTTGCTTGTAGTCATACGGGTTTGATTGATCAAGGGAGAAAATATTTCGCTTCAATGACAGACGAATATGAGATTAAGCCTGGA GTTGAGCATTACAATTGTATGATTGATCTCCTGGGCCGTGCTGAGCTAATAGAGGAGGCTGAAAGTTTACTAGAGAATGCAGACTGCAGACATGATCAAT CGCTTTGGGCGGTTCTTCTTGGGGCTTGCACTAAATGCTCAGACTATTTAACTGCGGAACGTGTTGCAAGAAAGATGATTGAGCTGGATCCTAATTTTCA TTTAAGCTATGTTCTGCTTGGCAACATTTATAGAGCAGTTGGCCGATGGAATGATGCTCTGGAGATCAGGAAGTTAATGGAAGATAGAGGGGTTAAGAAG ATTCCAGGGAAGAGCTGGGTTGATAATGAGAATCAGAAAGGTTCTCGTCTTGATTTAACCAAGATGATTGTTGCTGCGTAAAGCAGTGTTCTAGCATGGC ATTGGTTGTGTGATGAGTAGAAATTGGCAGCTGGATTTTTTAACTGCATCTGATACTACATCAAATGCACCCTCATTTCAAACTGCTTAATCTCTTAGCT GTCATGGAAGGTTATGAGCTAGGATTTACCCTTATGGAAGGGTTATGCTACCAGATTAACTTTTGCAAGCATTAGCTTTATGTAGAATATCAGAAGATTC TATGGTGCTGCTCTGCATTTCAAGAATGCTTTGTCGCCTGACTTTGAGATGGTACATTATGGCATCCTTTGGTCCATGTAGTCAACCCTACCTAGTGGGA AAAGGTTTATCTATTCATTTCTCAGCATAGGATTGTTGGGTGCCTAGTTGCAGAACCAATTGGAGTGCCTTGGTCAATTGCTGGACATTATATAGGGCGA GGAAAAAAGAAATAAAGTCATATGCAACCACTCTCCAGATCAGGAATATTATTTTTCGAAGAGAAGTTGAAAAAATAGTCATTTCAATGTGATTCTGAGG GAATGGTTGGATAACATGGCAGGGCAATCTTCTGTGAAAACAATGCAGTAGCTGCTGGTTGTGTTATTAGAGCCATTGGGTTACTCCTTCCAACAAAAGA AAAGGAATCTCTTGCCAATTGCTAGGTGCAGTGAGGTAAAATAAACTTGGCTCTAGTTTTTTAGTGTTTTCTCATGACAATGTTAAAAGGAAAATTTTTC TATCAAATATTACACACCTCACCTACACAAAGGTAGTTTAGTTAATTACTTGGTTAGTTGGTTAGCACTTAATGTTTAGCAGACTAATATATTTTTCTTT GAAAATATTATGTTAGTCCATAAGTCAATAGTCTAACTCACCAGTACCAAGTCCAGCTTAAATGTAGAAATAACTGAGTTGAACTAAAATCATGTAACCC AACCTTCGACAATGGTCGGCGTGTCATGAGACTTACAAGAGTATATATTTAATCCAATCATCTCAAATATTAGAAGGGCTAGACCTAATTCAACCTCAAA AGCTAGCTTATGAGGTGAGGGTTGTCTAAGCCTTATAAGCATTGATTTGGCCATATTTTCATCTGGTGTGAGACTTATCTTGATAGTACTTGAACTTACA CAACTAGTGTTGTCACAGCCAATCTCAGCTGGGAAGGCATTAACATTTCGTTACGCTGGAAGTAGATCGTTCTTGGTGTATAAAGCCAACAAGACATAGT CATAGGCCATGCTCATCTCTAATGAATACATCAAGCCACATCCTGATTAGTTATTATTTCTGCTCTTTGATGATTTAGACAAACGTATGCTATTATTCTT GCATGGTAGTAATTGTTCACATAGTTTATAAGCTGTGAAATCCTTGATGCCATCCTCTTCTTCTTGTTGTTAAGGCTTAGTTATCATTCTTAGTTGATTT TCCTATTAATTTTGTTAGTATGGATGTGTTGGTTGATAATAACATGGACCTAATCTTCAAGTTTAAGAAAAGAAGTCTTGAGGTCGAGTTAGCAAAGATA TATGTGAGAATATCCTCTTTCCTTTTATTCAAACATCATAGGAGGCTCATTGAAGTTATATAGATAATCTATTTTTGGCCTACACAAATTTATCTTATTT AAAAAACAGTTTGAGTTTAGGCTTTTTGAAAGACCTATTTAATTATGTAATCTAAGTCTTAGGTTGTTATGTAATCTCATTATTCTTTAAGAATTTTATA TGTTGATAGCAATAATTTAGAAATATTGCTTGGTTGTTGAGAGTTTTATTTGAGTGTGTTTTGCATTTGATGAGTTTCCTAGAG BLAST |
Tissue | flowers |
Gene name | LI_gene_22425; |
Additional information | details; |
FPAB | abscising flower pedicels |
FPNAB | non-abscising flower pedicels |
LF1 | lower flowers stage 1 |
LF2 | lower flowers stage 2 |
LF3 | lower flowers stage 3 |
LF4 | lower flowers stage 4 |
UF1 | upper flowers stage 1 |
UF2 | upper flowers stage 2 |
UF3 | upper flowers stage 3 |
UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_152406
Blastp | Pentatricopeptide repeat-containing protein At1g03540 from Arabidopsis with 59.47% of identity |
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Blastx | Pentatricopeptide repeat-containing protein At1g03540 from Arabidopsis with 59.18% of identity |
Eggnog | Pentatricopeptide repeat-containing protein(ENOG410Z7Z7) |
Kegg | Link to kegg annotations (AT1G03540) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019415827.1) |
Pfam | PPR repeat family (PF13041.5) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |