Id Trinity | FTRINITY_DN51646_c0_g1_i4 |
---|---|
Name Transcript | Ll_transcript_152365 |
Sequence | GAGCTGGTGTTAAGAGCAATGAACCGACGCGGAGGTCTCTCCCGGAGCTCCGACGAAGTTCTCTGTCTTCTTCTTCTTCTCCGAGAAGCAGTATCGCCGG GGATCCAGTTGCGTCGGTGGGACCGAGTTCGAGGACGCGAGTTACATCAGGTACGAGTAACGTAGAGTCTGCAAAGAGGCCGTTGAGTAAGCCAGTATCA TCCGAAGCTTCTATTTCGTCGCGAAGAGGTGCTTCTTCCACGGCGGATAGTAGTGGTGGCAGTTCTGTGAGGAGATCGGTTTCGAAGTTTTCGTCACCGC TATCGGCGGCGCGGTCGTCTTCGGTTTCCATTGGAATGAGGACTGGTTCTCTATCGTCATCATCACATGATAAGAGTTCTGCTGTGTCTGGAAGGAGGAA GGTGGGGACTCCAGATAGCCGTGAGTCTCGTTTTGTTGTTCTTCCGCACGTTGACAACAAGGCCAGTGATGATGTGAGATTGGATCTTAGGGGACACAGA CTCCGCAGTCTCAATACTAGTGGATTAAACTTATCCTCAAACTTAGAGTTTGTTTATCTTCGAGACAATCTCTTGTCTACTTTGGAAGGAGTAGAAGTAT TGACAAGAGTGAAGGTTCTTGATTTGAGTTTTAATGATTTTAAAGGGCCTGGATTTGAGCCTCTTGAGAACTGCAAAGTACTTCAGCAACTCTATCTTGC TGGAAATCAAATCACTTCATTGGCAAGTCTCCCACAGCTTCCTAATTTGGAGTTCCTCTCAGTAGCTCAAAATAAGTTGAAATCTCTGACCATGGCAAGT CAACCTCGACTACAGGTACTAGCTGCCAGCAAAAACCGAATATCCACCCTCAAGGGTTTCCCATATTTACCTGTTCTTGAGCATTTCCGAGTTGAGGAGA ACCCAATATTGAAGATGCCTCATCTGGAAGCAGCATCAATATTGCTAGTTGGGCCTACTTTGAAAAAATATAATGATAGAGATCTTTCTCCTGAGGAAAT CACACTTGCAAAGCGTTATCCTACACATACAGCATTCTGCATCAGAGAAGGTTGGGAGTTTAGTCGCTCTGAGCATGCTGCAGATTCAACTTTCCGCTTT CTAGTTGAGAAATGGAAGGACTGTATTCCTCCTGGGTTTTTTCTCAAAGAAGCCTTCATAGATAAACCTTTAGAAGAAGATGTGTGTCACTGTCACTTCA CAATTATTCATGATGGTGCAGCAACTGCTGACTCACCATTAGTTTTAAAATATCAATGGTTTTGTGGTGAGATGTCTCTTTCGAATTTTGTCCCTATTCC AGATGCTACTAGTGAGATTTACTGGCCAAAGCGTGAAGACATTGGAAAAATTCTGAAAGTCGAATGTACTCCCACTTTAGGTGAAACAGAGTATCCTTCA ATATTTGCCATATCTTCTCCAGTTTCACCAGGGAGTGGAATTCCAAAGGTTGTAAATCTTGAAGTGCACGGGGAACTGGTGGAAGGAAGCATCATCAAGG GGTGTGCTAATATTGCATGGTGTGGTGGGACTCCTGGAAAAGGAGTTGCTAGTTGGCTGAGGAGAAAGTGGAATAGCAGTCCTGTGGCCATTGTTGGGGC AGAAGATGAGGAATATCAGCTTACCATAGATGATATTGATTCAAGTTTAGTTTTCATGTACACACCAGTAACAGAAGAAGGTGCCAAAGGAGAACCTCAA TATAAATATACAGACTTTGTAAAAGCTGCTCCTCCTTCAGTCAGTAGTGTTAGAATAGTTGGAGATGCTGTTGAAGGAAGTATCATCAAAGGAGTGGGTG ATTATTTTGGTGGAAGGGAGGGTCCCAGCAAATTTAAATGGTTAAGGGAGAACGGCAATGCCGGAGATTTTCTGTTGGTGTCAGCTGGTACATCTGAGTA TACCTTGACCAAAGAGGATGTTGGTCGGCGTTTGGCATTTGAATACATACCTATTAATCTTGAAGGCCAGGAAGGAAAGTCGTTGTCTGTCATGTCTCCT GTTGTGAAACAAGCACCCCCAAAAGTAATCGATGTCAAAATAGTTGGGGATCTACGAGAGAATGGCAAGGTCACTGTGACTGGTATTGTTACTGGAGGAA CTGAAGGATCTAGCAGAGTTCAGTGGTTTAAAACACGTTTGTCAACTTTGGATGAAAACAGTCTAGAAGCTTTAAGTACTTCCAAAATTGCTAAGGCATT TCGCATACCTCTTGGAGCTGTTGGCTTCTACATCGTTGCAAAATTTATACCGATGACTCCTGATGGTGATTCTGGTGAACCAGCATTTGCAATATCTGAT AGAGCAGTTGAGACTCTTCCGCCAAGCTTGAATTTCTTATCTATCATCGGAGATTACAGTGAAGATGGAATATTGACTGCTTCATATGGATATGTTGGAG GCCATGAAGGAAATAGTATATATAATTGGTGTCTTCACGAGGTCGAAGGTGATGTTGGTTCTTTGATTCCAGGGGTTTCGGGAATTCTGCAATATCGTAT TACTAAGGAAGCCATTGGAAAATTCATTTCATTCCAGTGTACTCCTGTACGTGATGATGGTGTTGTAGGTGACCTACGAATTTGCATGGGGCAAGAGCGT GTTCGTGCTGGAAGCCCAAGATTGCTTTCTTTACGCTTAACTGGAGATGCTGTAGAGGGAACAAACCTGAGCATTGAAAAGAAGTATTGGGGTGGTGAAG AGGGTGATTCAGTTTACCGCTGGTTTAGGACCAGGTCTGATGGCACACAAACTGAAATCATGGGAGCAACCACTGCATCATATGTGCCCTCTATTGATGA CATTGACTTCTTTATTTCTGTTTCATGTGAGCCAGTCCGAAGTGATTGGGCTCGTGGACCCATGGTTCTTTCTGAACAAATTGGACCTATAACACCTGGT CCGCCAACATGTCATTTTCTGGAATTTCATGGATCAATTATAGAAGGCCAATGCTTGAACTTTAATGTTGTATATAGTGGAGGGGAGAGAGGAGATTGCA CACATGACTGGTTTAGAGTGAAAAATAATGACGTACGGGAGAAAATAAGTAGTGATGAGTTTTTGGATTTGACTCTTGAGGATGTTGGTGGGTGTATTGA ACTAATCTATACTCCTGTGCGCAAAGATGGAACCAAAGGCATCCCAAAGAACATAGTTTCTAGTACAGTTTCCCCTGCGGATCCAAAGGGAATGGATCTC ATAATTCCTGAGTGCTCGGAAGACGAAGAGCTCATCCCACTTAAAAAATATTTTGGTGGACATGAAGGAAGTGGAGAATATATATGGTTTCAGACAAAGG ATAAGGTTGAAGGGCCTGCACTTCTAGATATATTTAATGCTTCTGATGTGGAAATATGCGGGACAGAGCTAACATATAAACCATCACTCAAAGATGTCGG CGCTTATTTGGCTTTGTATTGGGTGCCTACTCGTGTCGACAGAAAATGTGGGGAGCCATTAGTTGCAATTTCCAGTACCCCAGTTTCTCCAGCTCCTCCA GTTGTTTCTAATGTCGATGTTAAAGAGTTGTCTTTGGGACTTTATAATGGAGAGGGTGAATATTTTGGTGGATATGAAGGAGAAAGCCTCTTTAGCTGGT ACAGAGAAAATAATGGAGGAACCATTGAACTGATTAATGGGGCAAATTCAAAAACCTACAAAGTTTCTGACTCAGACTACAGTTATCGTTTGTTGTTTGG ATATACACCAGTTCGCTCAGATTCAGTTATAGGAGAACTCAGGTTATCTGATCCAACTGACATTGTTCTCCCAGAGCTTCCATATGTGGAGATGCTTGCT CTTACTGGAAAGGCAGTTGAAGGTGATGTGCTCACAGCTGTAGAAGTGATTCCAAATAGTGAGACTCAACAACATGTTTGGAGCAAATACAAGAAAGATA TAAAATACCAATGGTTCTGTTCATCTGTAGTGGGAGACAGTTTGTCATATGATCCAATACCCAATCAGAGTTCTTGCTCCTATAGAGTGCGGCTAGATGA CATTGGTCGTCGTTTGAAATGTGAGTGTGTGGTAACTGATGTATTTGGAAGGTCTGCTGAAGTGGTGTACATTGAGACGACTCCTGTATCGCCAGGGATT CCGAGAATACAAAAGTTGGAAATTGAGGGGGGAGGATTTCATACCAATCTTTATGCTGTCCGTGGCACTTATAGTGGTGGTAAGGAAGGAAAAAGTAAAA TCCAGTGGCTTAGATCAATGGTTGGAAGTCCTGACCTGATCTCCATACCAGGAGAAACTGGCAAACTGTATGAAGCAAATGTTGATGATGTTGGCTATAG GTTGGTGGCCATCTATACCCCTGTAAGAGAGGATGGAGTAGAAGGCCAACCAATTTCTGTATCGACGGAGCCAATTGTCGTTGGTAAGTTGAAATTCTTT ATCTAATTGCCAACAGTTTGTCTACGTTTCATTCTTTTGACATTTTTGTTGTTGTCAATATGATTATTTGAGTTGGTGACTTGGTAATTTTGCCAATCAG ATGGTACTATCCAGTAGATGGTTTTGTTAGCTTATATTTTTATGAGATTATGATTATGGATTCAGAGTGGTGGTTATGTCCTATGCAGTATGCATCTGTT TTTATATATAAATACTATGATAACCAACTAGTATCCTACTTGGTTTCATATTGGGCCAAGTGGCCTAATTTTAATTTATTATTCCCGTACTATTATGGAT TTTTAAGTAAGATAGTGAGGCAACTGAATTGAGGAAAAATTGAAAAT BLAST |
Tissue | flowers |
Gene name | LI_gene_22491; |
Additional information | details; |
FPAB | abscising flower pedicels |
FPNAB | non-abscising flower pedicels |
LF1 | lower flowers stage 1 |
LF2 | lower flowers stage 2 |
LF3 | lower flowers stage 3 |
LF4 | lower flowers stage 4 |
UF1 | upper flowers stage 1 |
UF2 | upper flowers stage 2 |
UF3 | upper flowers stage 3 |
UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_152365
Blastp | 187-kDa microtubule-associated protein AIR9 from Arabidopsis with 66.82% of identity |
---|---|
Blastx | 187-kDa microtubule-associated protein AIR9 from Arabidopsis with 70.46% of identity |
Eggnog | leucine Rich Repeat(COG4886) |
Kegg | Link to kegg annotations (AT2G34680) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019416977.1) |
Pfam | Leucine Rich repeats (2 copies) (PF12799.6) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |