Id Trinity | FTRINITY_DN51762_c0_g6_i3 |
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Name Transcript | Ll_transcript_26363 |
Sequence | CTTCTTTTTCCTTCTTTCATCCCATTAGACATTAGTTTGCATTTGCTCAATGTACTTGTGTAATGTACTTCTGCATTTGTACTTGCTTTGGAAGTACATG ACTTTCACTTAAGTAGAAGTAAGACATAATTTGAAATGTAAGTTCCAAGAGTTGTGTTAATTCTAACTTGGAGGTGAAAAATGGAGATCATAATATAATA AGTCACAAGGTTTTAAGTGTCTTGTGTCAATAATACAAATTGATGGAGAAAAAGAAGATGCAAACCATATGATTAAAGCGGGGTTGATGGAATGTTGAAG TGCTTTGAATATTATTGTACTTTGTGGTAAAAGTGTACTACTCAACCGCAAGGGAAAAATTTATTGTACGAAACTGTATGTTAGGCTGTTAGCGATAAAC TGCCAAGAGAATGAACTGAAAGTAGCAGAGACAAACATACTGAGTTGGATGAGTGGACACACTAGACAAGATAAGATTGTGAGTTAATGCATTAGAAAGA TAATTCAGGTAGAATATGGTAGAATCTCTTCTTATGTGATTTGGGCATGTGTGAAGGAGACATAGAAGCCCCCATTAGGAGTGTAGATCAGATGGATAGT ACTATTTTTAGAGGTACATAGAGACCACGAAAAACTAGGCGGAAATACTGAGTGGCTCAAATATCATTGGTTTGCATATGAACATCAATTATGATAGAAC ATTATGACACAATATGATCCATGTAGCCGACTCCACCTTATCAAAGCTTGACTGTTGTTTAGGTTGCTCTATTCTTTTGTCAACATGTTAATGTTTGAGT TTTTCTTATCGCCATCAGTATTGTTCTGAAACATGTAGATTTTGGCCCATATATGCTTATGGAACAATTTCTCTATTTCATGATATACCATGTGCAGGTG ATTCGAGAAAATCAAGTGGTGGTAGTGGTTGGAGAAACTGGTTCTGGAAAGACAACACAATTGACACAGTATCTGCATGAGGATGGATACACTATAAATG GCATAGTAGGCTGCACCCAACCGAGGCGTGTGGCAGCTATGAGTGTTGCCAAGAGAGTTAGCGAGGAGATGGATACAGAGCTGGGCGATAAAGTTGGCTA TGCTATACGTTTTGAGGATGTGACTGGGCCAAATACCATTATAAAGTACATGACAGATGGAGTACTTCTACGTGAAACACTCAAAGACTCTGATCTAGAC AAGTATCGGGTTATTGTTATGGATGAAGCCCATGAAAGATCACTCAGTACAGATGTTCTTTTTGGAATATTAAAGAAGGTTGTGGCACAACGTCGCGATT TCAAGCTGATTGTTACATCAGCAACTCTTAATGCACAGAAATTTTCGAACTTCTTTGGAAGTGTGCCTGTTTTTCATATTCCTGGAAGAACATTTCCTGT GAATATATTATGGAGTAAAACTCCAGTTGAAGATTATGTTGAAGGTGCAGTGAAGCAGGCTATGACTATTCACATAACCAGTCCTCCAGGTGACATCCTT ATCTTTATGACTGGCCAAGATGAGATTGAGGCAGCTTGCTATGCCCTTAAGGAAAGAATGGAACAGATGGAGTCGTCTTCAAAAAAAGAAGTCCCTAAAC TCTCAATTCTTCCCATATACTCTCAGCTTCCTGCAGACTTGCAAGCAAAGATATTTGATAAAGCGGAAGAGGGAGAACGTAAGTGTATCGTTGCCACTAA TATTGCTGAAACATCATTGACCGTTGATGGTATCTACTATGTCATAGATACAGGCTATGGTAAAATGAAAGTATATAACCCCAGGATGGGCATGGATGCT CTCCAAGTCTTCCCTGTCAGTCGTGCTGCTGCTGACCAGCGTGCTGGTCGAGCTGGTAGAACTGGGCCTGGAACGTGCTATCGGTTGTATACGGAGAGTG CTTACTTAAACGAAATGTTGGCCAGTCCTGTTCCGGAGATTCAGAGAACTAACCTTGGCAATGTGGTCCTGTTGCTGAAATCTCTTAAAGTTGAAAATTT ACTTGATTTTGATTTCATGGATCCTCCTCCCCAAGATAATATTCTCAATTCTATGTACCAGCTGTGGGTCTTGGGTGCCCTTAATAATGTTGGGGGTTTA ACTGCTCTTGGATGGAAAATGGTCGAGTTTCCGCTGGACCCTCCACTTGCTAAGATGCTTCTGATGGGCGAACAGTTAGAGTGTCTTGAGGAGGTTTTGA CAATTGTTTCCATGCTTTCAGTACCATCTGTTTTCTTTAGACCCAAGGACCGAGCAGAGGAGAGTGATGCTGCTCGTGAAAGATTTTTTGTGCCGGAATC TGACCATTTAACCTTATACAATGTTTATCAGCAATGGAAGCAGCATGATTACAGAGGTGATTGGTGCAATGATCATTATTTGCATGTTAAAGGTCTAAGG AAGGCTAGAGAGGTGAGATCCCAGCTGCTTGATATTCTCAAGACTTTAAAGATACCCTTAACCTCCTGTTTTCCGGATACAGACATTGTCAGAAAAGCAA TTTGTTCAGCATACTTCCACAACTCCGCAAGATTAAAGGGTGTGGGGGAGTATGTTAACAGCCGGAACGGTATGCCGTGTCATCTTCATCCCAGTAGTGC TCTCTATGGTATGGGTTGCACTCCCGACTATGTGGTTTATCACGAGTTGGTCCTGACTTCGAAGGAGTACATGCAGTGTGCCACAGCAGTGGAGCCGCAA TGGCTGGCCGAGTTGGGACCCATGTTTTTCTCTGTTAAGGAGTCTGATACATCATTGCTGGAGCATAAGAAGAGACAGAAACAAGAGAAAACAGCAATGG AAGAAGAGATGGAGAATTTGAAGAAGGTGCAAGCAGAGGCTGAGAAAGAAATGAAACAGAAACACAAGGAAAAGATGGCTAAGCAGCAACAGCAAATCTC CATGCCGGGTTTGCGAAAGGGTTCTTCCACTTTTTTGAGACCAAAGAAGTTCGGTTTGTAATAACACTATCAAGTATTTACTTGTAGTAGCCTCATACAT TCTCATTGTAATAACAAAGTTAGAATTTGTACCCATTAGGTTACTGATGGTCTCATATGAATTCTAGGTAATGCACATTCATTATTTAGTTTGCTTTGCA ACCTTGAGCACTGTATCTGTTGATATATTGTTTTTACTCAAATCAAACAACTTCAATTTGTTAATTTACATTAACAAGAAATGACAGAAACCGTGTTTTG AAACGTTAAACâBLAST |
Tissue | flowers |
Gene name | LI_gene_22811; |
Additional information | details; |
FPAB | abscising flower pedicels |
FPNAB | non-abscising flower pedicels |
LF1 | lower flowers stage 1 |
LF2 | lower flowers stage 2 |
LF3 | lower flowers stage 3 |
LF4 | lower flowers stage 4 |
UF1 | upper flowers stage 1 |
UF2 | upper flowers stage 2 |
UF3 | upper flowers stage 3 |
UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_26363
Blastp | Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 from Arabidopsis with 86.54% of identity |
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Blastx | Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 from Arabidopsis with 86.54% of identity |
Eggnog | helicase(COG1643) |
Kegg | Link to kegg annotations (AT5G13010) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019457682.1) |
Pfam | DEAD/DEAH box helicase (PF00270.28) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |