| Id Trinity | FTRINITY_DN51982_c0_g1_i6 |
|---|---|
| Name Transcript | Ll_transcript_143535 |
| Sequence | AAAGTTTTGAAAGCTATTTAAAAATTTATAAACGGTTCAAAATCTATGGAGTAATTAAACTTTTATTTTACAGATTACCCAAATGGTTTTCCAATTTCTC AATTCACCCCTTAAAGTTCATTTATTTGAAGTATTAAATCACCTTATACTTGAACAATTGCACTTCTGATTCAAGCTTTGGTTTCTCTACTCTTTCCATG GCCACTCTTCCAATACTCCAACACGAAGAAAAGATAATACAAACCGTTAACCAAAACCCTGTTGTTGTAATCATTGGAGAAACCGGTTCCGGAAAGAGCA CACAACTCTCTCAGATTCTTCACCGCCACGGTTACTCCAATTCCGGCAAAATCGCCGTCACTCAGCCCCGCCGTGTCGCCGCCGTATCTGTCGCTAGACG AGTTTCTCAGGAGCTTGGGGTTCATCTTGGTGAGGAAGTTGGGTATGCAATTCGATTTGAGGATAGGACTTCACATGACACACGCATAAAATACCTAACT GATGGGGTCCTCCTCCGTGAAAGTCTAGCTGATCCCGAGCTAAATGATTATTCTGTAGTCATATTGGATGAAGCTCATGAACGAAGTTTAAACACGGATA TATTGATGGGGTTGATGAAACGCTTGGTTAAAGTTCGTTCCTCTGACTTCAAAGTTTTGATCACATCAGCGACTCTTGATGGCAATAAAGTATCTAAGTT CTTTACAGATTGTCCTGTCTTGACAATTCCAGGAAAGCTGTACCCAGTCGAGATACTTTATAGCAAGGAGCGCCCCTCAAGCTATCTCGAGTCTTCTCTG AAAACAGCTCTTGGTATTCCGAGGAGTTTTAACTTCATCTTCTTTCCATAATACATGTTTTAATAGTACCTATAATTTTTAGTATACCGTGCATGGTGTC TAAATAAACTTGCGCTGGCACCATGTGGTCAGACAAAAATTATGTCAATATGTTAACTTTTTGCCTGGCTCATTGCATATGATATAAACTCCTACATGAC ATGCGTTTTGTCATCTGTTAAGCTTTCTCTTTAAAAAACTGGTATTGGCCCTTAAAAAGAGCATGATAAAATTATTGCATATAAGTAAACAAGATGCTAA GGCCTAAGAGGGTGATGCATTTTAAATCTGAATTGTGAAATTGTTGATATTGATGTAAAATATTACACTCATCTCCTTTAGGCTTTAGCTCCTTCGATGA TTCAATGGCTGGTAACTTTTCAAATAGAAAGTCAGGAAATATTGTCAAGTTCTATCAACTTGACCTGTATGCACTCCAGTTCAGATGTACTATTTTCTGT AGTTTAACCTTTTATTTTCAGATATACATGCTCGTCAACCAGAAGGGGATATTTTAATATTCATGACTGGACAGGATGATATAGAGAAGTTGGTATCTAA GTTGGAAGATAAAGTTCGGGCTCTTGAGGAAGGTTCCTGCATGGATGCTATAATCCTTCCCCTACATGGTTCTTTGCCACCTGAATTGCAGGTGCGTGTA TTTAGTCCCCCACCTCCAAATTGCAGACGAATTATTGTTGCAACAAACATTGCTGAAACTTCTTTGACTGTTGATGGTGTAGTGTATGTCATTGACTCTG GGTATGTGAAGCAAAGGCAGTACAACCCATCTGCTGGCATGTATTCTCTTGATGTTGTTCAAATTAGCAAAGTGCAAGCTAATCAGCGTGCAGGCCGAGC TGGACGAACTCGTCCAGGGAAATGCTATCGTCTATATCCTTCTCGAGTTTATGATGATGAGTTCTTGGATGCTACAGTTCCTGAAATACAGCGATCTTCT CTCGCTGGCTGTGTTCTTTACTTGAAGTCATTGGACCTTCCAGATATTGACATTCTCAAATTTGACTTTCTTGATCCTCCTTCATCTGAGTCCTTACAAG ATGCCTTGAAGCAATTATATCTGATTGATGCAATTGATGAAAATGGTGCAATTACAAGTATTGGACAAAAAATGGCTGAACTTCCGTTAGAACCATCCCT CTCGAGAACCTTAATGGAGGCAAACAATTATGGTTGCATTTCCGAGGCTTTGACTGTTGCTGCCATGTTATCAGCTGAAACTGCATTGCTATCAGCACCA GGGCGGAGCAAGACTGAGAGAAAGAGGAAAAACCCAGTAACTAATCTTCCTGATGGTTCTGGCTTGGGTGACCACATTCAATTGCTGCAGATATATGAGT GTTGGGATCAAACTGATTATGACATTGGTTGGTGCAAAGATAATGGCTTGCAGGTGCGAGGGATGTTGTTTGTTAAAGATGTCCGTAAGCAGTTATCTCA GATAATGCAGAAAATAGCGAAAGTAATATTGAGCTATGGCAGATGCTTAAAAGAGTAAAAAGGGATAGACATTTTACCATAATGCGATTAAATTATTACA CGGAGATAGATCATTTTCTTCGAAGGACCATTGGATATAAGGGCAAATGGGAAAGGAGAAGAGTTCCGCAAGGGTTATCGAAATTTGAGAAAAGCTTTAT GTACGGGCTATGCGAATCAGCTGGCTGAAAGAAAGATGCATCACAATGGTTATCGAATTCTGGGTTTTCAAGCCCAGGTAGTCCAGGTGCATCCATCATC CATGCTGAAAGCCGATGAACTGGGCAAGTTCCCGGACTATGTTGTATACCATGAGCTGATTGCAACTCCACGGCCATACATGAGAAACGTGTGTTCTGTT GAGATGAGATGGGTTGTACCCATTATTAACAAGCTTAAGACACTAGATGTGTACAAATTAAGTGGTGGTGTTGAACACATTGAGGAGGAAACTGAGAGAA ATCTCCCAGATTTGCCCAAAAAGGATGTTGAGGTTGCTGCATCCGGTGATGACCGTGAAAGTAGAATACAAGCCGCTAGAGAACGATTCCTTGCTCGCAA AGGCAAAAAATGAGCGCACTTACACTCGAGGAGATCGTGATATTCACATGTTAGGCATTTTAGAAGAGCAAGTCAGTTGTTAAATTTCTCTGAATGCGAC AAGCGGGATGAACCCAGATTTAAATTTTCGTGTTATCACAATTCAATGGTTTGATATCATGCCAATTTCATCCTCATGCAAATATCTCTTGCAAGCATAG GAGGATTCAGCGCAGAAAACTTAAGATTGGACTTCATTCTGCTATGATAAATTGGTTGAGTTATTGAATACATTGCTTGCCTTGCAGAGTGTGCACGATA TCAAGTATCTTGTTATGCTTCTTTGTTACTGTAATGTAGCTGAAGTGGGAAAGAAGACAAGGAAAAATGGAGAGAAAAATTAGCAAGCCCCTTAAAAAGC AAATGTTGATTGAACAATTCTAAGGGTGTTTTGGCTTTATAGACATCAAAATGAGTTAATTACCATTTATTGCCACTTTTTCTTTAAAGGTATAATTTTA CATTTTCCTTGCTTTGTAACGGGTCATGTAGTCTTTCAGCAATCTCATGAAAAAAATTACACTTCTAAAATCGGGACATATTCTATCTCAAAAAGTGTAT CACTCCATCT BLAST |
| Tissue | flowers |
| Gene name | LI_gene_23437; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_143535
| Blastp | Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 from Arabidopsis with 81.1% of identity |
|---|---|
| Blastx | Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 from Arabidopsis with 69.22% of identity |
| Eggnog | helicase(COG1643) |
| Kegg | Link to kegg annotations (AT1G27900) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019460163.1) |
| Pfam | Helicase conserved C-terminal domain (PF00271.30) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |