| Id Trinity | FTRINITY_DN52029_c0_g1_i7 |
|---|---|
| Name Transcript | Ll_transcript_221088 |
| Sequence | CACAGTTACCCAGACCCTTCCTATAAATAAAGCCCCGACCCCTTCCTTTATTGTTAACTCAATTACGGAAAAGTTAGGGTTAGGGATTTTACAATTCTCA AAGGGAAAGTCGAAGAAAAATCTCAATCTCACAAATTTCACGATGACAACACCACCAAAGAAGATCACTCTCAAGAGTTCCGATGGAGAAGCCTTCGAGG TTGAAGAAGCGGTGGCTCTCGAATCTCAAACCATCAAACATATGATCGAAGACGATTGTGCCGATAACGGTATCCCTCTTCCTAACGTCACAAGCAAGAT ACTTGCCAAGGTTATTGAGTATTGTAAGAAGCACGTTGAGGCTACGAGTTCTGAAGAGAAGCCTAATGACGAGGATCTGAAGGCTTGGGACGCTGATTTC GTCAAGGTTGACCAGGCTACACTCTTCGATCTGATTCTGGTAAGATTTCAGGTTTCAATTTTTTCTTTCATTTTTGATGCCGAATCGATTGTATGTGTTT TTTGTTACGGTTGAAATTGGTTTTTTTTCTTCGGATTTCTTGTACAAAATATTGGGGTTTTTTTATGGTTGGTTGAAATTGTGTTGATATTTTTTGTAAA TTTGTTTAGGGCTGGTTGGTTTGACTTCTGCCAATTTCATTTAGGGTGTTCACAGATTTTATATGAGATAGGGAATTTGTATGGATTTGGATTGTCGTTT CACTTTGTTTGGGAATTGTGAATTGTTATTTTGATATTTGATGAGGTAGTTTGTCCTTTGAATTGTATTAACTTGCAATTGTCCCACGTCTGTGAAGTAA TATTTGGATGTTATTTGATATGCGCCACTGTCTGGTGCTGTAATTTGGGGCCTGGGGTTTCATGAACATATCATGATCCGGAACTCGATATAGTGACATG TTTTTTCCGTTCTATCTGTACCGAAGATACAGTTTATTTTTTATATTTTGGTGCATGTTTCTGTCTGCAGAAATTGATGTTGCTGGACATGTGTTTTGCG TCTATACTTGATCATGCTACTTCTTATCGGTCGTAATTTGCTGGGATGTTATTCAGAGTACTTTTCTTTTATGCATAAATTCTTAGTGCTAACTATTATT CTCTTCGCGTAATTGTATTCACAGATGTTGAATACCTTTGTATTTTTCATGCTTCCATGTTTTATGTTATTTGTTGAAACATAAAACACAATCCGAGTTT ATTAAGTATGTTAATGCTGTATATCACACTTGTGAAAAATATTCGTTGTAGGCTGCTAACTACTTGAACATCAAAAGCCTGCTGGACCTTACATGCCAGA CTGTAGCAGACATGATCAAGGGTAAGACTCCCGAGGAAATTCGCAAGACCTTCAACATCAAGAATGACTTCACCCCCGAGGAAGAGGAGGAAGTTCGCAG GGAAAACCAATGGGCATTTGAATGAGCTTTTCTAGCCTTGAAAATCTCTATTAAGGACTGTCACGAGGATTTATGTTATGCTTTTGTTTCTTCACCAAAG ACCCGCCCTGTGGATTTATATATGCTATATATACTTTGCTTTATTTTAAATTTCTGTTGCTTCCTATGTTCACTGTTCAGACTTATCTTCTTTCACGAAC TTAAGGGCCTTTTAATTTGTAAGTAATGGTTGAATTTGGTGAGATTCTACTACAAGGATTATGTATAATTCTACCGTTTACAGCCTTTGTTTATTCGTAA TGTGGCATGGTTCGTGACATTGTGGATTAGAATGTTACTTCAAACCCTTTACTAAGTACTTGATCTATACGGAATGTTGGGTGATATGCAATATTCACCA AGTGGTAGCTGCTTGTGTCCGTGTTATTTTCCTTGCTACTTAACGTTCTATCATTATAGGTTAACGAGCTTACTCGTATGTATCATTTACCCTTTCTTCC CTTTTATCTATATTATTGTGGATAACATTCTATTCAAAATAATACTGAACGTTGGGATTTAGCACGTGACTTTTGGAAACTTGTGTCTACTGGC BLAST |
| Tissue | flowers |
| Gene name | LI_gene_23546; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_221088
| Blastp | SKP1-like protein 1A from Arabidopsis with 69.37% of identity |
|---|---|
| Blastx | SKP1-like protein 1A from Arabidopsis with 71.3% of identity |
| Eggnog | ubiquitin-dependent protein catabolic process(COG5201) |
| Kegg | Link to kegg annotations (AT1G75950) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019421251.1) |
| Pfam | Skp1 family, tetramerisation domain (PF03931.14) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |