| Id Trinity | FTRINITY_DN52048_c2_g3_i2 |
|---|---|
| Name Transcript | Ll_transcript_221159 |
| Sequence | TACTAAACAAAATTGTACTAGTAATCCAGAACCGGGTGAGGCAGTCACCGGTTTCTCCCCCAACACCACAGTGCCACGACAACATACATCAAATCAATAA CACACCCTAACACTCGCATTCACCTTCTTCATTCTACTTTTCGATTATTGTTTCGTTGCTGAGAGATTTAAATTTGAAAGAAAATAAAATGTTTTTGTTT GATTGGTTTTATGGCATTCTATCATCGCTTGGGCTATGGCAGAAGGAGGCTAAGATCCTTTTCTTAGGTCTCGATAATGCCGGAAAAACCACCTTGCTCC ATATGCTTAAAGATGAGGTCACTTTCTATTTTTCTTTTTATTTCTAATCTCTGTTTTTCTTTTCCGATTATTTATTTATGTTTATTCCTCTAAAGGGTTA AATTCTTCTGAATCTTTGTCTCTCTCTACAGCGCTATGTGATTTGCTATAAATTCTAACTTTCTATTTTAATGGAGATCTTTTTTGCTTAGTTACTATTT ATAAAGGATTCTACTTTACCATTTCTGTAAAGAATTAGTCATGGATGATATGTTTGAATTTTCCACCATTCACAGTAACATGGTCTTTTGGTTGTGTTGG CTCTGTAACAGGAGTAATTTTACCTTGTATTCAGTGTTTTGGATGATATTTTTGGTGTGGTTAAAATCATTTAGTTCAACTTATCCTTCATGGGTTATTT AAACATGGGATTTTTCTATTCCCGAGGGCTACACTTGTTGGGAGAGGCTGCCATACCCCCGAAAAGGATTAGCTTCCTTACTCATAGGGCAAGGGGATAC CTTTCGTTATACAAAAAAAACATGAGATTAGTGTTTCAACATTGGGTACAAGGCTATATATATTGACTTGTCTGGATAAATCTCCTTCTCTAGGAAGAGT TTATGTGTAAAGTGAGAAAGTGATGGTGGTTACATTATTAGTGAGTTAAAGATTTTAATGCAATTTAGATTAAATCAATGGTGAATCTGAATTCCTCATT AATTGCTTAATAACTTAATTTATACAGAACTTCATTTTATGGAAGCCTTTTCCAACAATCCAACCCATTTTGGTCTAATTGTTGTGAGAAAAGCACAGGC ATCAACAGATATAAATAAATGTGATGTCAAATAATGTTTGTGTGATGTTTTTATTATGGGAATTGGCTTGGCAGAGATTAGTCCAGCATCAGCCAACACA GTATCCTACTTCAGAGGAGTTGAGTATTGGGAAGATCAAGTTTAAAGCATTTGATCTCGGGGGTCACCAGATTGCTCGCAGAGTCTGGAAAGATTACTAT GCCAAGGTTTCTCTCTTTCTCCAAAATACACTCACACTCGAGCACACACTTTTGTTTGCATATTTGCAAATTCTACCCCAAGGCCAAGGGGAGATATTTT AATCATGCATTTTCAAAACTATATGATTGGATACCACTTGAGCGTATGGATATTTTAGGAATTTAAGATAAATTATTTTTCCAATCTAATGTAGTTTTGT CTACATGCTAATGTGTTGGTCATTTAGAAGCGTCAAATATAAAGCTGTTCAGGATAATGCAAACTGGCAGTCCTAGCTGTTTGCTAGGGTAAGTATTTGC TATGCCCATTACTGGAATTGCTCCAAAAGATGAAGTTGTGAATAAAAAAGAATTTTTTGTTGTGGCATATTCTAAATTATTGCGTCTTATTAAATTATAC AACTCGAGGTATTTAAATGATCGATGCCTTCATAATCCCAGCTAATCATTCAAAGTTTATCTGATTCATGGGAGGCAGAAATTATTCATGGTAATCACTG ATAGTGCCTTTTCTCTTTACAGAGTTGCTAATAGTATATTATCACTTATCAGACATCGGTAGTTTTTCCAATATGCTTAAATCAAGGGATGCTCATGCCT TCATGATCCTAGCTAGCTATTTCATCTTTATCTGATTCATGGAAGCAGAAATCATTTTGGGAGTTCATTGTTGCTACCTTTTCTCTCTCTTTAGAAGGGC TACTAATAGTATTTCTGGAAAAAAATGATTCTCTGAACATATCTATCTGCATGTTCAACTCTTATATACAGATTTTGATTATTTGAAACATTAATGCATT GTTAGAAATTAATTTCTTTTTTGTTTAAAATTGTTATTTGTATTTCTATTCTCAATCATTAAGCTTTTCTTGGATTTGGTACAGAAAGTTATGTTCTATT TTTGGTGTGCTTTATAAATAGATAACAAAACATGACATGAGATTAAGAAGGTGAACATTTTGGTTTCATTGAAAGGAGTGGAGCCATAGATAATATAATG ATGTTTTGTTTGTGCACCTAACACTATCTGAGAGCTTGCTTGAAAGTTCTGAGCTAGGAACTTCTCTTACTTGAGATTTATTATTTTCTCTCTCTTTTAT ACATTTTTATGACCTTGACTAAGCTTCATCTTTCTTTGATCTAGGTTGATGCCGTGGTCTACTTGGTTGATGCTTATGATAAGGAAAGATTTGCAGAGTC TAAAAAAGAGTTGGATGCTCTTCTCTCTGACGAGGCTCTGGCTACTGTCCCCTTCCTTATCCTTGGAAACAAGATAGATATTCCATACGCTGCCTCCGAG GAAGAGTTACGTTACCATTTGGGCCTGACCAACTTCACCACAGGCAAGGGCAAGGTAAATCTGTCAGACTCAAATGTCCGTCCGATGGAGGTATTCATGT GCAGTATTGTGAGGAAAATGGGTTATGGAGATGGCTTCAAATGGCTTTCTCAGTATATCAAGTAAACCATTAGTAAGATATGGCTTGATATCTCATTTCT CGAAGTTTATTGCTGTAGTTATGAATCTGCCGTGTTGTTAGTACATATTGCTATTATGGAAATTGCAGTATATTTCAACTTTATATTTTGATGAAAATGG AGTCATCCCTCCCCCTCCATAGTAAAAGCAAATTTACTGGTTTTTTTCTGATTGTCTCCGAAAATGTTGTTTAACCCCAGTTTATCATAACTGATCACTT TTATTCTTCTTGTGAGAGCTGCATAAGTTTAACAAGCTACCATATAAAGGCATTAGTGTTCCCAGTGATTATAAATGTAACGCAGTAGTTGTGTCTTTGT TAGTGTGTGTATCTTCTCAAATTTATCAAAGTCAATAGAGTTACTATTTTTTTGGAAATCGCTCAATCTTTTTCCATGACCACAGGCATTTACTGCAGCA GCCCCTGCAGCAACTTTTGTTTGTCTATCATTTATCAGCATACTGCTAGCCATGGTGTTTCCCCTTCACAATTGAACAAGGATACATTTGAATCAATAAC CTGGAATTTTAATATTTTAATGAATTTAAACCGACATCGAAACATATCTTCTAGCAGGGGTAATCATGATAGATTAGTTTCTTATCAACAGGCACAATCC TACAACCAACCTTGGCATAAGTCATAAAGTATTTGTTAAGGAATCCATAAATAGAGGTAATGCATTAAAGATTCTTTGCTTGAAGTGAGG BLAST |
| Tissue | flowers |
| Gene name | LI_gene_23605; |
| Additional information | - |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_221159
| Blastp | - |
|---|---|
| Blastx | GTP-binding protein SAR1A from Arabidopsis with 91.49% of identity |
| Eggnog | Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. SAR1 controls the coat assembly in a stepwise manner. Activated SAR1-GTP binds to membranes first and recruits the SEC23 24 complex. These SEC23 24-SAR1 prebudding intermediates are then collected by the SEC13 31 complex as subunits polymerize to form coated transport vesicles. Conversion to SAR1-GDP triggers coat release and recycles COPII subunits (By similarity)(ENOG410YIKI) |
| Kegg | Link to kegg annotations (AT4G02080) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019441202.1) |
| Pfam | - |
| Rfam | snoR83 (RF01227) |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |