| Id Trinity | FTRINITY_DN52083_c0_g1_i5 |
|---|---|
| Name Transcript | Ll_transcript_221009 |
| Sequence | GTTAATTTTAAAATTTGAGTTTCAGATTATTTATTTAGGTTTTGATTTTAATTGAAGTCAAAAACTAATAAATTTTAAAATATTGAGAGCTGATATTTAT TCAAATCAATTTAGTTGAAGTCACAAACTAATGCGAAATGACATTTTAAACTGTTTTGTGGGGTTTAAGATTGAAGTTTTCTATTTGTTATATATATACT TGAATTGTAGGAAAAACTATACTCAGTGAAGGGTTTAAATCAAAATAAAATTATGATCGATTTTGTTTTGAAGTTATGGAGTTAATAAAAGATCCTATGC ATTTGTTGTTGAATAATCATGGGTTTGCCGGTTCCTCGTGGTGACTGAAATTGCTTCTGAAAATAAGTGATATTAATCAAGGCTGGAATCTCAAAACGGC TCTTCTATCCAAAATCTTTTCAATGAGATTTGGGAAAGGAACACAAAAAGAGTTAGAGAATTGGCATTATTTTTGCCATAGGCCTTTGGTTTGGAAGCAT TTCTTTATCACTGCCTGGATTTGGTGACAATGATTATTGTATTACAGATGTGTAGGTGTGAGTATTTCTCTTATAAGATGTGAGGCTCTTTTACATTCTC TTTTTTAGAAAAGTATACATGATTTTGTAGAAATATTTTGATCTATATATTATGTAGGTATTCAACAGTATATTGCATCCATGTTTTCTCTGCATTTTAT TTTTATGTAGTGTTTATGTAAATATGCATTATGTAGAACATAAATTTGTATTAGAACATAAAGTGTGTTTCTAAAGAAAGCCATATTTTGGTATGGTAAT GTTTTTTTGCATTTCATGTATGTTTACGTGATTTTCAATTTCCTGAAATGTCAAACTTACGAGTTTGTCAGACATGATGTTGCTGTTAATATTGAAGTTT TTGGATAAATCACATATTTTTGCGTGTTTATAGAACTGAATAGTTCCTTTTTTGCAGACTGTTCCTTTATAATTCTTGTATGTCTGCTAAGACTGTAAAA TATTAGACATTTATTTTGTTTTATTTTATATTTAACTCTGTTATTTACATGTTCTTGGTGGTTTTTTTAATTTTCTGCATGTTTTATTTATAAAGAAAAT GACGTGGAAGATTTTTGATATTATTATACACTAAATGATGTTTTATCACTGCTCTAAACTACCTATTGTTTTTTTTGCTACACAAATGTAAATTCAGCTA TATATGTGTTCTAAATGGTCACCTTTTGTTGTTTATGTTTTCTTCATCAATAGGGCTAAAGTAAGCCCCTTTTAAGCTCTTGACTTCTGTGTTAGCAATA ATTTTTGTTCTGTTTCCTTTATTAATCTATTCCGTCTTATTTTTTTCTGACTAATTTGAACTTAATTTTTTTATAATCTAACCTATTTGCAATTTAAATC GACCGCCATTTTATTTTCGAGTGGAAGCTGTGTGGTGCTTTGAATCTGTGAAATGATCTGTTATTTCTAATTTACAATGCTTATCCATGTAATTTACATG TTGGTTTAGTGGTATAAAACTTGTTTATTTATATTAACGTGCTGTTCTGTATAACCTTACCATCTTCTAAAATTTGAATATACAGTGAAGGCTTTCCCAA AAGATGACCAAAGTAAACCATGCAGATTGACTTCCTTTTTGGGGTACAAGGCTGGGATGACCCACATTGTTAGAGAAGTTGAGAAGCCTGGATCTAAGCT TCATAAGAAAGAGACATGTGAGGCTGTGACTATCATTGAGACACCTCCTTTGGTTGTGGTTGGAGTGGTGGGATATGTCAAGACACCTCGTGGCCTCCGC ACTCTGAATACTGTTTGGGCACAACATCTAAGCGAAGAAGTCAAGAGACGTTTCTACAAGAACTGGTCCAAATCTAAGAAGACGGCTTTCACCAAGTATT CAAAAAGTTATGAAACCGAGGAAGGAAAGAAAGGCATTGAATCTCAACTTGAGAAATTGAAGAAATATGCAACTGTCATTCGTGTTCTTGCTCATACTCA GATAAGGAAGTTGAAGGGTCTAAAACAGAAGAAGGCACATCTGATGGAGATCCAAGTTAATGGTGGTACAATAGCTCAGAAGGTGGATTATGCATACAAC TTCTTTGAGAAGCAAATCCCAGTGAATGCAGTTTTCCAAAAAGACGAGATGATTGACATCATTGGTGTGACCAAGGGTAAAGGTTATGAAGGTGTTGTAA CACGTTGGGGTGTCACTCGCCTACCTCGTAAAACACATCGGGGTCTGAGGAAGGTTGCTTGCATTGGTGCTTGGCATCCGGCTCGTGTTTCTTTCACAGT GGCCAGGGCTGGACAGAATGGATATCATCACCGAACTGAGCTGAACAAAAAGGTTTACAAAGTTGGCAAATCCGGAGAAGAATCACATACAGCCATCACT GAATTTGACAGGACTGAGAAGGATATTACTCCTATGGGTGGATTTCCTCATTATGGTGTGGTGAATCATGATTATCTTATGGTGAAGGGAGGCTGTGTTG GACCCAAAAAGAGAGTTGTAACTCTTCGTCAGTCACTACTGAAGCAAACTTCTCGTTTGGCTCTTGAAGAGATCAAACTCAAGTTTGTAGATACCTCATC CAAGTTTGGACATGGCAGGTTCCAAACCACTGAGGAGAAACAGAAGTTTTATGGCCGTGTGAAGGCTTAATTTCTGGATTATTTTTCTTTTTGCTGTGTT TTGGAATAGCTATACCGTTTATTGGATATTTTTGCATATTTTGCTTTCAATTTTGTCGCATAGTTTTGTATTTTCTTAATAAGATACAATAGGTACTGTT ACTGAATTGAAAAACCAGTGAATCAAACCCAGTTTTAAATAGAGTATACAATAACAATAGTTTTTGATTATTTTGCAAATGTGGTTATAATTTAATCAGA AAATAGAATACGCAGATAGAACAGAAGCCCATTATAATATCCTTTCAGACCACCAAGACACTATTTACAATGATACCATTCCACCAAGATGATCCCTCGT GCTTTTTGACCAAAATATATCATTGACATATGCAGTATTATAACTTATTGGACAATAGATTTGCACCATCCTTTACTTTTATAGTTACATATATTCATCC CTAAATAGGGGAGTTTCTATGTTATGGTTTGATTGGTTTGTGAAGGGAACGAGTCTAGTTTTTAGTGTAGGACTTCTCACCTTAATGACAAAATGTATTA TCTCTCCTAATTAGâBLAST |
| Tissue | flowers |
| Gene name | LI_gene_23724; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_221009
| Blastp | 60S ribosomal protein L3 from Oryza sativa with 86.35% of identity |
|---|---|
| Blastx | 60S ribosomal protein L3 from Oryza sativa with 86.15% of identity |
| Eggnog | One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit (By similarity)(COG0087) |
| Kegg | Link to kegg annotations (4351604) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019434008.1) |
| Pfam | Ribosomal protein L3 (PF00297.21) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |