Ll_transcript_29121

Id TrinityFTRINITY_DN52274_c2_g2_i2
Name TranscriptLl_transcript_29121
SequenceCTACTTAATTCATGCACTAGCTCACAATTCATGTCCCCATATTGATGAATGCAAGGATGTTGGAGCATATGATAACATATACCGGCAGTTGCACTTAATA CTATCAATGCTGCTGCAAAGAAATGAAGATCACAAGTCAGAAGTAACTTCTAACAGAGAAAAGGAAAATATATCAATCATCACTTCTATCTTTCATAATA TCAAGCATTCTGAAGATATAGTTGATTCATCAAAATCAAAGAATTCTCATGCAATGTGTGACCTTGGGTTAGCAATAACCAAAAAAATAGTGCAGAAGGA TGTTGATTTGCAAGGATTGTCTGCTTCGGTTTCTCTGCCTCCAATACTATACAAAACACATGAGAATAATGAAGCAGATGGCACTCTGGTAAGTGGTGTG AAGACCTGGCTGGCTGATGAAACTGTCTTGACTCACTTTGAATCCCTTGATCTAGAAATGGTTCCATCCCAATTAGCTGAGGATGAAGTTTCGAAGGACA ATGAAATTGATGGAAATGAAATGCCTCTGGGAAAGATGTTGAAGCAAATAAAATCTCAGAGAACCAGTGTCAAAAAGTTGAAAAAGAATAAGTCTGTGTC AGCTGAAACTGAAAAGGATGACCAAGATATTGATAACTTCAATTTGGTCAGACAAATTAAGTTGAACAACCATGGGTTATCTTATAATTCTGAACCAAGC AATGGTCATGAACATCGCTCGAGTAAGGATGCACTGAAGGATGCAGAAAATGCAACAGGTCAAAAAAGAAAATCTCGAGAAACAAAAGATATCCCAGTGC CTAAACATTGGAGGTCTTCCTGTACTAATTTGATATTATCAAGTAGTGCTTCAAAGGCTTCTCGAAGAGTTCCAAGAGAGGACTCCCCTGGAAACAAATT ACTGTTGGGTTCTGAATTTAATCCTGATCTAGATAGCAATGCTACACAGATAAATATGGTCGAGGGCAGTGATGAAGACCTGCTAGTGTCCTCTTTAAAA CAAAACGTTAAGGGCTCTGGCCAATATCATAATGATGAGACCGGCCAACCTGATGAACATGAGATGAAGAGTTCTGATAATTTAAAATTGAGTGATAGGA CGGCAAGCCACTACTCCAAGTCATCCATAGATTCTACGAAAAAATACAAAAGAAAAAGTATATCTGGTTTGGCTAAGTGCATGACAAGGGGACATGAAAT TGATAATGAAGATCTAATTGGTTGCAGAGTTAAAGTTTGGTGGCCAACGGATAAGAAATTTTATAGAGGCACTCTTAAGTCTTATGATCCTTTGAAAGGA AAGCATGTGATATTATATGATGATGGAGATGTTGAAATACTCCGTTTGGAAAAGGAGTGCTGGGAGCTTGTTGACAAGGGTCACAAATCTACTAAGAAGA TAAAACCCTCTTCAGTTAAATCGTCTGGAAAAAAATGTAAAGCTTCAAGTGGTGCACAACGTAAAATGACAAAAAAAATAGTTAACGGTAAACAATCTCC TATCAAGCCTGTGAACCGTATGAAAAAATGTGTATTGAAGAGTAATTTTGACCAAGAGGATGCCAAGGAGACTTCTGAGATATCAAATCCTGAAGTCATC ATGACATCTAAATCTGATGGGATGAGCTCAGGTAATGTATCTTAAAATCTATGCTATGCATGTGTGGAATGTCATTTGTGTCTTCAGAGTTCAGACAGAT TGCGTGATCATGGTATCAGGAAAATTTGTCTATGCATGGGACGTTTCATTCTATTGATATTTTCTAGGGTAGATCTGAGTACATCCATTCTGAAGGAAAA ACTTATAAGTTATAAGCTCCTTCATTTTGGCTAGGATTAGTGCCCCCCTCCCCCCCCAGGTTTCTTAATTCTTAGATAGCAAAGGTTCGTCTTTTAATTT AATATGACTTGCTATGTGGGGTAAATGCGACACGTTATCCTGATCAAGTGCAGTTATCCAGCTATTCAAAATTCTTTCCTTTTGTTCATGAGTTTCATTT TGAAGGTGGTTCAGAAGAGGTGGAATTGGTTGAATCATTGGATGAGATCATAACAATGGAGAGAAGAACAAAGGTATCAAAAGCAGTTTCCAGAAGAAAG AGGATTAAGGAAGCAAAGTTCTTGAGTTATATAGAAGAATCAGAACCAGCGAATAAGGATTATGGTGAGAGGCTTTCAGAAGATAGGTTGCATGTCACAC AAGGTGGTCAGAATGTTGATGAAGAAAGTAGTTCAGAAGAGAGAGAGGTAGATGAAGCAAGTGGAGCTTTGAGAGAAATTATCAATGGAGAAGAAGAATC AGATACTGAAGGGTATCAAGGTGACAGCAATGTGGGGGTTGGTCCTAGAAAAATGGAGAAATCACATATGCGGCCAACAAGTCCTGATGAAACCAGGATT ACTGAGATTGCTGATGATGTGCCTCTGAGCAAATGGAAGCAACAGACGGGGAAGAAAAGCAGCAGGAAAAGACAGTGAGCAGTTTTAGAAGCTGTAGCTT CATGACTTTCAAGATCAAGATTGCAGTAGAGGTGGTGTTACTGCTGCAGCACAAGTACATGTATCAGCTGGGAATGAAAATGCTACTTAATATATTAATG ACCCTGTATAATGTAGAATAACTGTAATTATTCTCACGTTTAGGGGATTGGTTGAAGGTTGTTGTGGTTTCTTTTTTGGGTTATGGTCCTGCTAATTGAC CTTTTACTAGTTCCAGGTGATAGGTTTTAGCATATGATTCATCCTTCCAACTCTATCCACATGCTTACTTTTACTTGACTAGGGGGTTATCGACAGTGTA CAGCTATAAGTGGGTATAATTGTATTTGTATCATTTAGCATACTTTTAAAATCTTGAGAACTGAGTGAGGGAAGGATTAAGTGACCTTGAAATGTACTCC TTTATTTCAAATCCTCTAGTGTCAACTTATTGAGGTTTTTGTATTTTCAATGTTGTTGCTATATGAAAGTTATATTAGGGAAAGGTGAACTGTATGGAGA ATTTATAATCGAATGTTGACAGTTTAACGTTTTCAACTACGAGGATAGTCTCCGTTAG BLAST
Tissueflowers
Gene nameLI_gene_24579; 
Additional informationdetails; 

Expression of Ll_transcript_29121

Labels

FPAB abscising flower pedicels
FPNAB    non-abscising flower pedicels
LF1 lower flowers stage 1
LF2 lower flowers stage 2
LF3 lower flowers stage 3
LF4 lower flowers stage 4
UF1 upper flowers stage 1
UF2 upper flowers stage 2
UF3 upper flowers stage 3
UF4 upper flowers stage 4

Annotations of Ll_transcript_29121
BlastpDNA mismatch repair protein MSH6 from Arabidopsis with 46.43% of identity
BlastxDNA mismatch repair protein MSH6 from Arabidopsis with 46.43% of identity
Eggnogthat it carries out the mismatch recognition step. This protein has a weak ATPase activity (By similarity)(COG0249)
KeggLink to kegg annotations (AT4G02070)
CantataDB-
Mirbase-
Ncbi proteinLink to NCBI protein (XP_019463683.1)
Pfam-
Rfam-
GOLinks to GO: General; Genes and gene products; Annotations; Ontology;