| Id Trinity | FTRINITY_DN52394_c1_g1_i2 |
|---|---|
| Name Transcript | Ll_transcript_230624 |
| Sequence | ATTATATTTGCTCAGCCCATTTTTCTCTTCAAAAGTCTTTCCTTCCAATTTCGGCCTTATTACCGCGCGAAACACTGGTTCCTCTACATCCCATAATCGA TGGTAGAATTCTACGAACACATAATCACAGAGCTTCTAGAAGATTCCAATGGCGGTCTCGTCATTCTCTCTTCTGGCCTCTCACTCTCCAAACTCATATC TACTCTTCTCATTCTACACTCTTCTTCTCAAGGCACCCTTCTCATCCTCTCTTCTATTTCAACTTCTCTTAAATCCAAAATCACTTTTCACCTCAAAACC CTAAACCCCCAATTCCATCAAATCCCCGCCGAAATCACCGCCGATCTCCCCTCCAACCACCGTCACTCGCTATACACCTCCGGCAACATCTTCTTCATTA CTCCACGCATCCTCATCGTTGATCTCTTAACTAACAAACTTCCAACCTCCGCAATTTCTGGACTCATCATCCTCAACGCGCATTCTCTATCTGAAACCTC CACCGAAGCATTCATCGTTCGCATTTTCAGGTCTCTTAATCGAAATGCGTATATTCGAGCGTTCTCTGATAAGCCGCATGCGATGGTTTCGGGGTTTGCG AAGGCGGAGAGGACCATGAAGTTTTTGCACGTCCGGAGGCTGCACCTGTGGCCGAGGTTTCAAGTGGACGTGTCGCAGGAACTGGAGAAGGAGCCGCCGG AGGTGGTGGATATAAGGGTGCCGATGACGAAGTACATGGTGGGGATTCAGAAGGGTATTGTGGAGGTTATGGATGCATGTTTGAAGGAGATGAGGAAGAC GAATAAGGTTGACGTGGAGGATCTGACGGTGGAGAATGGTTTGTTCAAGTCGTTTGATGAGATTGTGAAGAGGCAGTTGGATCCAATTTGGCATACTCTG GGTAAGAAGACTAAGCAGCTCGTGTCGGACCTTAGGACCCTGAGAAAATTGTTGGATTATCTTGTCAGGTATGATGCAGTAACTTACTTGAAATATTTGG ACACACTGAGAGTGTCGGAGAGTTTTCGATCTGTTTGGATATTTGCAGAGGCGAGCTATAAGATATTTGATTATGCAAAGAAACGTGTTTATCATCTAGT GAGATCAGATGGTATAAAATTAGATGGGTTGAGTAAGAGTGCCAAAAACAAAAAGAGAAAAGTTAAGGGGGATAACAAAGACACTGAAGAAGGAGTTGAT GGTGCTTCATCAACAAATTCAAATGCTGGCTTAGTCTTGGAGGAAGTCTTGGAAGAAGCACCAAAGTGGAAGGTCTTACGTGAGGTTCTTGAGGAGGTAG AAGAAGAAAGACAAAAGCAAGGTGCATTGAGAGAAGAAGTGTTGGCTGAAGGTGAAGACACTGACAATGGCATTGTATTGGTTGCATGCAAAGATGAACG GTCGTGTTTTCAACTTGAAGAATGCATCACAAACAGTCCAAAAAAGGTCATGAGTGAAGAATGGAAGAAGTACTTGCTAAGCAAAGTACAGCTGCGTGAC ATAGTGCATAATAAGAAGAATAAGCCAAAGGATCCCAAAGGTTTTGGGATCCTTGATGGAGTGACTCCCATAACACCCGCTCAAAATGCAGATACCAGCA GCATTAGTAAGCAGGAGCATGATGCACTTCTGGCAGCAGCATCGGGACTAAAAGATTTTGCTAAAAATGATCATGTTGAAGATCCCTCTCTGCCTGATTT TGGTGGACGGGGTCGTGGAAAAGGAAAGAGAAAAATAGGGAGTAAAAATGGTCCTATCGTCGTTGATGGATCTGGAGTCCAGAACAGTAATAAAAAGGCA TCAACAAGTGATAAATTTGGGAAATGTGATTCAAAAAATGAAGCCCACGTAGATGAAGCTAGTCCTGCCAGTTCTGGTAGATTTCATGAAATCATGCATG GTGGGACATCTGTAGACAACATAGTTCTTCGAAAACATACTAATACTGATGCTGCAGCTTTAAATGCGAAGCCACTACCTCCAGTACATTTTTATGCCAT AGAAAGTGATCAGCCTATATTGGACATATTAAAGCCCTCTATTATCATTGTTTACCATCCTGACATGGCTTTTGTTAGGGAAATTGAAGTCTACAAAGCT GATAACCCCTCAAAAAGATTGAAGGTATATTTTCTTTTCTATGAAGATTCTACTGAGGTTCAGAAGTTTGAGGCAAGTATACGTAGAGAAAATGGAGCAT TTGAATCTTTGATTAGGCAAAAGTCTATGATGATGATTCCAGTTGACCAGAGTGGGCATTCTACTTTAGAGTCAGATTTAAATACTCCTCAAAACTCAAT AACCAGAAAAGCTGGTGGGAGAAAAGAGGCTAATAAAGAAATGCAGGTCATTGTGGACATGCGGGAGTTCATGAGCAGCCTCCCAAATGTTCTACATCAA AAGGGAATGCACATCATTCCTGTGACCTTAGAAGTCGGCGACTATATCCTATCACCATTAATTTGCGTGGAAAGAAAAAGTATTCAAGATCTCTTTATGA GCTTCACTTCAGGTCGTCTGTATCACCAGGTGGAGACAATGGTGCGATATTATAGGATACCTGTACTCTTGATTGAGTTTTCACAGGACAAGAGCTTTTC ATTCCAGTCTGCTAGTGATATTGGTGATGATGTGACACCAAATAGCATTATATCGAAGTTGTCCTTACTTGCCCTACACTTTCCTCGGCTAAGAATAATC TGGTCTCGGAGTTTGCATGCTACTGCTGAAATATTTGCTTCTCTGAAGGCAAATCAAGATGAACCAGATGAAACAAAAGCAATGAGAGTGGGTGTCCCCT CAGAAGAAGGGGTCGTGGAAAATGATGTGAGGTAAGTGCTTTTTCATAGTTTAAACTTGAAAGGTGTTTCCAGCAATGATGTGAAACCATATTAAAGAAG TTGAATGCTTGGTGTCTTGCATATAATTTATTGTAATGGTATGAAACAGTAACGAGTTGTTTTCTCATAGTCTCAGTGATATTAATTTTTGACATTTCTA ATGGAAAATATTGATTTGTGGGCTTATTTGTTTAGGCACTTCTTACATAAAATTAGAATAGCTACTACTACATTTGTAGCATTGCCAGGTCACAAACATG AAACTTCCTTTGCCTATTAATATACAAGGGCTTCATGCCTCTACACATTAGCACATAAAATGTTAGAACTCGGGCTCAGACTCAGTCTTTCGTATCAAAT TGTTTCATCAATGAATTTGTATGCACTGATTGTTTTTATTCATTTAGCATACTAATTTGTATATATACTCGTTGAGCCACAGAGCTGAAAATTACAACAC ATGGGCTGTGGAGTTTCTTAGGAGACTTCCTGGTGTTACAGATTCAAACTACAGAACCATAATGGATGGGTGTAAGAGCTTGGCAGAACTTGCTCTTCTT CCTGTGGAGAAGCTTGCAGAATTAATGGGGGGTCATAAAGCTGCTCGGACTCTAAGAGATTTTCTTGATGCTAAATATCCAACTTTATTATGAGGCTAAT TGGGGTATATACAAAATATACAACTTATTACTGTCGTCTATTAAGTGCCTTCCATTTGGTGGAAAACGGGTCAGCGAATTACTGATTATGTTTCTCACTC ATGTTCATTATTACTATAGTTTTAACAGTATTGTAAATTTGTAATACTTAATTATTTCTGTTCTAAATATGTATCCTCAAATTCAAATTTTATTTAAATT TCAAAGCATCATTTAACACTAAAAAA BLAST |
| Tissue | flowers |
| Gene name | LI_gene_25298; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_230624
| Blastp | DNA repair endonuclease UVH1 from Arabidopsis with 66.09% of identity |
|---|---|
| Blastx | DNA repair endonuclease UVH1 from Arabidopsis with 66.9% of identity |
| Eggnog | Excision repair cross-complementing rodent repair deficiency, complementation group 4(COG1948) |
| Kegg | Link to kegg annotations (AT5G41150) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019421212.1) |
| Pfam | ERCC4 domain (PF02732.14) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |