| Id Trinity | FTRINITY_DN52471_c0_g2_i4 |
|---|---|
| Name Transcript | Ll_transcript_87240 |
| Sequence | CTTGACAGAACATGGAGTGGCTCTAGTTGAAAACAGGATCCACTGAAAAAATGCTTCAGATTACCGGAAAACACTTCATAGTTTTCAGCTTGTTGATTTT GGCATGCCAATTCACAAACCACTATGAACTGGAATTGAACTGGAATTAAAAGGTTTCATGTAACTACAGTTTTTGCACAACTTGGCAAATACTATTTATA AGAATCATATTTCTTTTTCCATAAATCAATTAAGGGAATTGTAAATAAGTTTAAAAAGTATACCGGGAGGATCAAAGTTTGTTTGAATTGGGATGAGATA AATGTACTAGGAGTGTGGTATGTTTTGGGTCAGGTAATCATCAGGTTACACCGTTACAGGAATGGTACAGGGTAATTAACTTGACTCAATTTGCAATACA TAAGTTGAGTGCTTAGTTGATTTGCAATTGAAATAATAATTAACCAAGGAATGAAATGAGTCATTCTGAATTATGCTAAAGAGAGATGATATGTTAATGT GGCTATAGCTGAAGAGTATACTCAGAATTTAATCATAAATTTATTTGGATCTCTGAATTTGTGGAAGGTAGTATATTTATAATGTGGTTCAGCTCACCTG TATGCTACACGTACAAAATAGTGAACCCTCTCAAAAAATTTCTGTCTCAAATGCATGTACTTTCACTTTCAGAAAATCCTGTGGCTATAGATGTTGTGCG AGAGAGCCTTTGTAAACTTTTGGCCGGTCAATATGTTGAACGCTGCCCTGCCCCTGAGCCAGTTCTTTTTCCAGTAGTTGAAGAAACTACTACCAGGAAG CGGGGTGCTAAGTCTGCTAAGATATTCCAACCACCTCTAACTATAGAACAACGCGTTCTAGAAGTATCAGTGGCTGGGGAATCAATCAGATTTTCACTCA CAGCAGATACAGGATTTAATGCCGACAGAGAAACAAATTCTGATGATTGCCCCATGACAAGTGTTGAAGATGCTGTAAAAGAAGAGCTAACTCCTTGGCG TGCAAACTTCGAAGAGTTTATGCGTCATCTTAGGCATAAGGCATTGATTGAGAATGTAAGAACTAGGCTGGATGAAGGAGCTGCTACTATCCTAAGTGCA ATACTAGATGCTACTAGAACTGCAGAGAGAAAAGTGAAAGTACAAAATTCAGTGCCCTTATCACTGGAAGCAATTTTCACCGAGGTGGTGAAGAGTGAAA ATGGCCGTACTATGACCATAGATCGTGTTAAAGCTTCTCTTGTCCAGTTGGGCTGTCCATCGAGGGTGCCTGATGATTCATATACTATTGATTTGAAGAA TATTATTGAATTGGCCCGAAATGATGAGGTTGAGTCTATTGTGCTGAAAAGGTATGGACCTTATGCATATAGAATGTTCAGGCTACTGTCTAAGGCCAAT TGTTTTCTCGAGACAGATAAGATAGCAGAGTCTACTCTTGTTGAGAAAAAGGAAGCTCCAAGGTTACTACATGGATTATGGAAGGATAACTACTTGCATA TGGAGAAATTACAAGTGATGGCAAGTAAGCAATCAAGGTTTGTGATGTGGAAAGTTAATAAACCTCAGCTATGGGATTATGTACTAGACGAGATGTACCA TGCTGCCTTAAATTTGAACCTAAGACTGGGTTTGGAGCAAGAGAAGGATGTAGAGCTTTTAAGTGTTCCTCTAGACAAGATCAACGAGTCCAAATCGTTA CAGAAGAAATTCGAGCGGAGACGAAGAGTCCGGTTACTCCTGGGATCATCATTGATGAAACTTGATGATGCTCTCATGCTTTTCCATGACTTCTGAACAT AACCACATATTTATTATGACATCTTCTTCTTCTTCAAGGAATATAACAATGTAGCATTTTAATATGGAAACTACCTTATTACGAATGCAATACAACTATT CACATTAAGTAATGACAGGATGCAAATTTTGACTTGATAATTAGATTTGGATTTAATATGGATTCTCTATTGGGTTTACTACTCACATATTAAAATGATT GTATGCCATAAAACTATCTGGAAACTTGGAAAGTTGAATAAATATAAATGTAACTTATTTGTTAAAAAA BLAST |
| Tissue | flowers |
| Gene name | LI_gene_25772; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_87240
| Blastp | DNA-directed RNA polymerase III subunit RPC3 from Bos with 22.02% of identity |
|---|---|
| Blastx | DNA-directed RNA polymerase III subunit RPC3 from Bos with 22.02% of identity |
| Eggnog | DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific core component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs(ENOG410XPVH) |
| Kegg | Link to kegg annotations (507314) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019442131.1) |
| Pfam | RNA polymerase III subunit RPC82 (PF05645.12) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |