| Id Trinity | FTRINITY_DN52646_c3_g2_i4 |
|---|---|
| Name Transcript | Ll_transcript_208078 |
| Sequence | GTGAAGAATGAGTCTCAACACAGAGACTATAAAACGCAGAAACCCTAGAATCTCAAATCCCAAATCAGCAAAGGGTAAGTTCTTCGGCGGCATTTATCGG CTTCCTCCTCTCTCCGATCACCCACTTCGAACAAAATGTCTTTGGTGGCAAACGAGGATTTTCAACACATTCTTCGTGTGTTGAATACCAACGTTGATGG GAAGCAGAAGATAGTGTTTGCTCTTACCTCAATCAAAGGTATTGGAAGACGATTGGCGAACATTGCGTGCAAAAAAGCGGATGTAGATATGAACAAGAGA GCTGGTGAATTGACTGCTGCTGAGTTGGACAATATCATGACTGTGGTTGCCAACCCTCGGCAATTCAAGATCCCGGATTGGTTTTTGAATAGAAAGAAGG ATTATAAGGATGGAAAGTTTTCTCAAGTGGTGTCAAATGCACTGGATATGAAGTTGAGGGATGATTTGGAGCGTTTGAAGAAAATCAGGTGATTCATTTC AATCATTTGCATATCTAAATTTTAAATTTGCAATAGAATTGAAACTTTAGTTTATAAATAATGCTCTTTTGGTAGTAGCACTGTCTTAAATTGTGGTAAC AGTTGCAATGTTTGCAAGTGAGGTTATTGTGGCCGCTGTGATACGGATTGTAGCCGTTGTGGTGTGAATATTTTTGCGATTAATTTTTTTTGAACCCATT GCTACCCGATATGGTCTGATGTAGTTGCGTTGCGGCCGCATCATTGTGATTTAATGTCACATTGCAATCGTTGTGTGATGTGGTGGTTGCGGTGATCAGC ACAACTGCAATATTGAGGTCACATCATGTGATGCAGTTTGGAATATCAAACAATGGGTAGGAGTAATCATATATGCACACAACACAATAATCCTAGGAAT CTGATATGAAGAAAATGAAATGCTATATGTCATGTGAGAAGTCATACAAACAGTATGTGGAAATGATTTTGAGATGTTCTGTCTGCCCTCCTTGTTCACC TTGATGTGATATTTATCCGAGTTTCACTGAACATTTTCCCGTAAGAAGGTATGTAAAGTAGAAGTTAGTAATGACATATGTCAGTGTGTTCTAGTTCTGT CAGCTATACAGTAGCAAGAAGATAACTATTGAATATGCAGTTAATGATCTTTAATTAGGCATTCTATAAGTTAAGGATTATGACGAGGTTGCACTCAATA GGTTATTCATATTCTGATGAGTTGATGTCAAAAAGCCAGTCTTTCCCAATTTCATAAATATTGTTGAATACATCAATCTCATGTGTTTACTATAATATGC AGAAACCACCGTGGTTTGAGGCACTACTGGGGTCTTCGTGTTCGTGGCCAGCATACTAAAACTACCGGTCGCAGGGGTAAGACTGTTGGTGTCTCTAAGA AGCGTTGAGCTGTTGTATTTTTGCTTGGATAATAGAAATTGTTGGGGGAGCAAATTCAGAATTACATTAGACATGTTTGCCACAATTTGTTATACTCTGG ATTTCAAAATTTTGTTTGTTATATTGTGTTCAGTTGCATACTGGATTGGTGGTAACTAATGTTGCAGAGACCTTCTAGTTTTGATAAAATTATGCATCCG TTGTGTACCAAAAAATAATTACATATGCAGCTTGTTTAGAAAAGTAAAATGCTACATTTTAGAAAAAGATAAGTTGCAAAAAGTTACCTCATGGATTTGC GTATGGATTTCTCCTCAAGGTCGGTTTAGCAGGGGAGCATATTTTTTTCTTCCACAAGGAGTTGGTTTAGTTGTGCAAAGTCATATTAGATCCCAGAATG ACCAAAAAGTCGAGAATTTGATTCTCGAGAGCAACATTTGTTGAGAGGCAGTCGTGCATCACAAAAGGGATTAGTTTCTTATCATAAGTTAGGGATACCC TTAGCAGTAACGAAAAAGAATGTGTCACTCTGTGTCATAAAAAGCTGAACTAAACTAACCTGAGTTTCAACTTAGCATCTCTGCAACAACCATGTGTGGT TGGTCATGTTCCTCTTATAGACTATAATGTTATATTTGGTTGGAGTGAAAATGGAAGGAAAGAGAAGGTGAGGAGAGAAAATGTGATAAAATCTTCGTTC CCATTGTTTGGTTGGAGAGATAAAATAAGGAAAGAAATAAAAAAGGTAGTGGGACCCACTAAATGGAGTGAAAATGGATGGAAAATTTTATGACTGTTAT ATATGTATTGACGGTGTAAAAATTTATACATAGTTAGTATCATGCACCTTCTTTTTAATTAGTCTTAAAAAAGTCAATGATAATTGAAAATGAATAGTAG ATCATGT BLAST |
| Tissue | flowers |
| Gene name | LI_gene_27134; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_208078
| Blastp | 40S ribosomal protein S18 from Arabidopsis with 92.37% of identity |
|---|---|
| Blastx | 40S ribosomal protein S18 from Arabidopsis with 92.17% of identity |
| Eggnog | Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits(COG0099) |
| Kegg | Link to kegg annotations (AT1G22780) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019464902.1) |
| Pfam | Ribosomal protein S13/S18 (PF00416.21) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |