| Id Trinity | FTRINITY_DN52677_c0_g1_i6 |
|---|---|
| Name Transcript | Ll_transcript_207447 |
| Sequence | AAAATAATATTAGAGCGAGGAAATCGCAAAGGAGTGTGACAAAGCTGTAGTGAGTGAGAGAAAGAGAACACAGAGAGTGAAGCAATGGCCGAGTACGAAG AGATATACGAAGAGAACGGAGAAGAGAAGGACCATCACAATTCTCACGCCCATTCCGATTTTTCTCCGCCTCCGAACGCTGATCTCACTGAATCCAAATC TCACTACGGATCTCGTGATTATGGTAGAGAATCTTCCAGAAGCAGAGAAAGGGAACGAGAGAAAGGGAGAGAAAAGGAGAGAAAAAGAGATAAGGGGAGG GACAGGGATAGAGAGAGAAGCGGAGATAGGGAGAGAAGCAGGGATAGGGAGAGAAGCAGGGATAGGGAGAGAAGCAAGGACATGGATAGAGAGAAAAGCA GAGATACGGAGAGAAGCAGGGACAGGTATAGAGAGGGAAGCAGAGAGAGGGAACAAGATCAGGATGGAGAGAATGAAAGAGACCGTGACAGGGACCACCA TCGTAGAGATCGGCACAGGGATCATAGTGAGAGAAGGGAAAGGGGAAGAGATAGAGATGACGATGATTATTACAGAATCCGTGACTATGATAGACGAAGA GATTACGACAGAGAGGATAGGCATAGGCGCAGGTCCCGGTCTCGATCTACTTCAATGTCAAGGCGTAGATCTGAGCATAGATCAAGATCTCGTTCTCGTT CACGTTCAAAAAGGTAAGTCATGGGAAGATCCTTAGCATCAAGTGTATAAAAATGAATGGCTACATGTTGCTTGTGACTGTCATTTTGGAAAATCCTAAT TTCTGTTTCATCATAAAATAAAATAGTTGGCACATGTGCAAGTGAAACTAGTGTAATGATGTTGTGAATGGCTGTCAATTAGAGAAATAGTTAATATAGT TGAAAAGCTGTTTTATTTCAGATCTTATTTCCAATACTTCCTTCATAATTTTAGTTTGAGAGAAAATATACAATTATATTTCTTGGCTGAAATATTGTTT ATGACCACATACTGTGTATTGATTACTACATTAAAATCTCTCCTTTTGAATTGTGTTAGATCATTAGATGCGGTTTTGTTTTACTTTGTCTTTTTTCTAT TGTTTTGCTCTTTCACGTCCCTTTAGAGTTTAGATATGGTCGAATCTCAAATCCTCAATGTTTCCTCTTACTTTGAATTTATGAAAATATTTGTATACAC TTACATATATATTCTATATGAGTATTTTAATTATTATTTTCATAATATCTTTAGTTCATTTTGCTACTGATAATTTTATAGAAGAATTATTAGTGGATAG TTATACCCAGATGTAGACAGAAGATTCAAATACAGAATTACAGATTGATTGTATCTATATTTGGAAAAAACACCATAATTGGCTGTGAAACGATTTTGTA ATGTATTACACAATAATGGTGCTAATTGTAACATTAGAAACCAGTTGGAAGTTCCGTGTTAATTGACCATTTATTGTTGGAGGTTATAGATTTTCCCTGC AATTTGTAGTTTTCAAATGCTATTTATTAATTGCTATTGTCAGAGCCACATATATATTATGTCAACATTATAGTTTTACTGTGGATGATGAGCTTGGTCC AACAGTGAGGTTGATGCTTAGTGACCATGAGATCATGGGTTCAAGTCTGGAAACACCCTCTCGGCTTGCGGGGGTAGAGCTGTGTGCGTCTACCTTTCCC ATACCCCACTGAGAATCTCGTGTACCGGACCACCCTTTTATTATAGTTTTACTGCATTCAAATCCTGTTAAAATACAGTTATTTTCAGTGACTTCGTACC CATTAATATGTTTCTCCCACATGATTTTTTTTTGTTAATTGAAAATACCACTAATGTAAATGTGCTACAAATCTTAAGTTCATATTTTATATATTTCAAT ATTCTGAATAGAATTTATCCACCTATTGTAAAATGTTTCTTGGCATGAAAGGTCACATGTATTATTGGAATACTAAATTCATTTACTTACAGCAAAAGGA CTAGTGGTTTTGATATGGCTCCCCCTGCTTCAGCACTGTTAGCTGGTGCTTCTGCTGTTACAGGTACATTTACTCTCATATATCATGCATCTGATTTTTT AATCTTAACTGCTTTGTTCCTTTTGTTCTAGTATGGAAAATTCATATCAAATTGCATGGTGCTTACTTGGTAAGAAATGTTCTGTTATTATATGAATATA TAGCTCCTTGAAGACTGGTTTCCCATGCTCTGTAATTGTCTTTCTTTTAACTTTTGATTTAATTCTGGAACTAAAAGATGCTTTGGTTTTTGTCTTGTGT TTGGTGTTTCTTTTGTTTTTGTCTTGTCTTATGTTCTAAGAAGGCAATGTTGGGCTACTAGCCCCAATGTGCTGACAATGGCCTGAGCCGACATTTGTAG CTTTATTGTCCACGGAGGAATGAATGCACCAGTTTTTGGTGGGTCTGGTTCGTCTACATCTGGAAACTGTTGGCCACTTTGGTAGACTTGCAAATATTAT CTCTAAAATTTGTTTAGAATGTTCCTTTGATCTTGTTAAAATGATATATGCATTGAGCTTAAATTATGCTTAAGCTGATGCAAATTGGGGCTAAAGGAGT CATTTGATACTTATGCATTACCACCCAAAAAGATTAAAACACAGTTTGTTCTGAGATACAATACCTTTCTGTACCCTTTGCAGGTCAGATGATTGCGACA AATGCTGCAATTCCTGGAGTGTTTCAAAATATGTTTCCATTGGCTACAAGTCAGGTGCAGCCATTCAGTGCTCTCCCTGTCATGCCAGTGCAGGCTATGA CACAACAGGCTACTCGACATGCTAGGCGGGTGTATGTTGGGGGCCTCTCTCCTACAGCCAATGAGCAGTCAGTTGCTACTTTCTTCAGTCAAGTTATGGC TAACATTGGAGGGAACACTGCCGGCCCAGGTGATGCCGTGGTCAATGTTTACATTAACCATGACAAGAAGTTTGCCTTTGTAGAGATGAGGTCCGTTGAG GAAGCTAGCAATGCAATGGCTTTAGATGGTATTATTTTTGAGGGGGCACCTGTTAAGGTTAGGAGACCTACTGATTATAATCCTTCTCTAGCTGCTACCT TAGGCCCAAGCCAACCTAACCCAAATCTTAACCTGGGTGCTGTTGGCTTGACACCTGGGTCGGCTGGTGGACTTGATGGGCCTGATCGGATTTTTGTGGG TGGACTTCCTTATTACTTCACTGAAACACAGATCAGGGAGCTTTTAGAGACATTTGGTCCTCTAAGGGGTTTTGATTTGGTGAAAGACAGAGAAACTGGA AACTCGAAGGGCTATGCATTTTGTGTTTACCAAGACCTTGCAGTTACAGATATTGCATGTGCAGCTCTCAATGGAATAAAAATGGGAGATAAGACTCTGA CTGTTAGACGAGCTAATCAAGGTTCAAACCTGGTGCAGCCTAAACCTGAGCAAGAGAGCATTTTAATGCACGCACAGCAGCAGATTGCCCTGCAGAAACT TATGTTACAACCAGCATTAGTGGCAACAAAGGTGGTTTGCTTAACTCATGCAGTTGCTGCTGATGAACTCAAAGATGATGAGGACTACGAAGAGATTCTT GATGATATGAGACAGGAGTGCTCCAAATTTGGTAATTTCTGATTTAGTTTGCTTGTCTTCCACTACAAGTTATAAGAAATTGATTTCAATTTTTTCCTAT GCACTTGTTTTACAGCCATTTGTAGTCCCAAATTCTACTGTAACGACTCAAACCTAACTTACAGGCTGAAGCCTCCATAACTCTCCTGTCTTTCAGTTTC CCGACATGAACTTGTTTAATTGCATATTTTTACAACTTATTTGCATATTTCACTTCGCACTGGTTTCCACAATCTGCAGGTACTTTGGTGAATGTGGTGA TCCCTCGCCCACGACCAGATGGTGAACTGGCCCCTGGAGTTGGAAAGGTGTTTTTGGAGTATGTTGATGTTGATGGTGCTACAAAAGCCCGTGTTGGATT GAACGGAAGAAAATTTGGTGGAAATCAAGTTATAGCTGTGTTTTATCCAGAGAACAAATTCGCCCAAGGAGATTATGAAGGCTAGTTGAATTGCTATGAC ATTGTATCTTAAAAGATTTCTTCTTACAGGAGCTGCATGCATTTCGTATAATACAGAAACTTATGGATTCTATTTTATTTTATCTGATGGCTGTAAGATA GTGATTGCGATTATGGAGAATGGGTAGGGATGATGAAAAGGTACCAAATGCAAAACTATGAAGATGTTATGGTAATTTGTTAAAGGGCAAGGATATCTAA ACACCTCCCTTACTTTTACTTGCAATCCCAATTAGCCGTAGATATCAAATATCTAAATACTCATGGGTTGAAAATAGATGACAGGCTTAACAAGGGTTGA ATTGTGATAACCC BLAST |
| Tissue | flowers |
| Gene name | LI_gene_27347; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_207447
| Blastp | Splicing factor U2af large subunit B from Nicotiana with 83.49% of identity |
|---|---|
| Blastx | Splicing factor U2af large subunit B from Nicotiana with 83.12% of identity |
| Eggnog | - |
| Kegg | - |
| CantataDB | Link to cantataDB annotations (CNT0000929) |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019440705.1) |
| Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (PF00076.21) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |