| Id Trinity | FTRINITY_DN52791_c4_g1_i3 |
|---|---|
| Name Transcript | Ll_transcript_228708 |
| Sequence | GCTTCATTCCCCTTAAGCAAGGACCCGAGTTCAATCCTTGTGGATGAAAAAAGTCGATCCTTGTGGGCCGTTGGGTTGATGGGCTTTTCAAGCCCAAACA TTGAAAGGTTCTCATACTTTGGTTCATCAATCTCTCTGAAACTGAAGCAGAAGTTGAAGCAACGATGGAAGGGTTGAAGGGTTTTTTGAAGAAGGGTTTA GGCGAGATGGCATTTAACGCCGGCGGCGGAGCCATCAACTGGTTCCCGGGACACATGGCCGCCGCCACGCGAGCCATCCGCCACCGTCTTAAGGTCGCCG ACCTCGTAATCGAAGTCAGAGACTCTCGCATTCCGTTATCCTCTGCTAACGCTGATCTACAGCCATTGCTTTCTGGAAAACGACGCGTTGTTGCACTCAA TAAGAAAGACTTGGCTAACCCTAACATCATGCATAAATGGGTACGTTATTTCGAGACATGCAAGCAAGATTGCATTCCTATAAATGCGCATAGCAAGAGT TCTGTCAACAAGCTTCTAGAGCTGGTAGAGTTCAAATTGAAGGAATTAATTTCCAGGGAACCTACACTTCTTGTTATGGTGGTTGGTGTTCCTAATGTGG GGAAGTCTGCTTTGATTAATTCCATTCATCAAATTGCACAATCTCGCTTTCCTGTGCAGGAGAAGATGAAGCGAGCTACTGTTGGTCCACTACCTGGTGT TACTCAAGATATTGCAGGATTTAAGATAGCACAGAAACCAAGCATATATGTCCTAGATACCCCAGGGGTGCTGGTTCCAAGTATCGCAAACATAGAAACT GGGTTAAAGCTAGCTCTTGCAGGGTCTGTGAAAGATTCTGTGGTGGGTGAGGAGCGCATTGCTCAATACTTACTAGCAGTTTTAAACATCCGGGGGACTC CACTTCATTGGAGGCACCTAAAAAACCGGAGAATAGATGGGATTGAATATGATGCTGAGGAAAAACATGAATATAATCTGAAAAATCTTAAGCCAAAGAG AAAAAATATGCCAAATAGATCTGACTTGGTATATGTTCAGGACCTTGTGATGGATGTTCAGCATGCCCTCTATTCGACAGTAACAGAATACGGTCGAAAC GTAGAAGACGAGAATGACTTAGAGGACCTTATTGACAAGCAGTTTGATGCACTGCAGAAGGCATTTAAGATACCTCACAAGGCTTCAGAAGCACGGTTGA TGGTGTCCAAGAAGTTCCTTACTCTATTCAGGACTGGTAAACTTGGACCTTTCATTCTTGATGATGTCCCTGATGTCAAGCCTGTATCATAAAGATATCT TCACTATTCAATTGTGTAAGATCTCCTACCTTTATTTATATAATAATATATTTTATATTTTATTCTAAATTTTGTTGTCAAACTAATATGATTTATGATA GAACATTATAGGGCCATGCAGTTCATATAGCGGAATCCACTTAGTGAGAACAACAGCTATATGATTATTCTAAGTTTTGCTGCAAGTTGGTTTTATTAAA AAAGAGATGTTATTTTTGCTGAACTTGGAATGCAATTTAGTGAAGATTTCACCTCCTTGATTAAATGCACAACTTCATAATGTTGGTAGTAGTTCTAAAT GGTAGGATATAAAAGAGTGTAGCAATATATCCATATTTGTTTTAGAAGGATTGGTCATCTCCATTAATTCAATTTTTTGCACAGTTTGTATCCATATTTG ACTTATGATTTTTTGCACAGTTTGTATTCAAAGGGAAAGGGAATAAAGTATCTCCTTACACAAGGAGATAAATTATCTCCTTAAATCTATTTATTGTTTG ACACGTG BLAST |
| Tissue | flowers |
| Gene name | LI_gene_28145; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_228708
| Blastp | Short integuments 2, mitochondrial from Arabidopsis with 72.97% of identity |
|---|---|
| Blastx | Short integuments 2, mitochondrial from Arabidopsis with 73.46% of identity |
| Eggnog | Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity (By similarity)(COG1161) |
| Kegg | Link to kegg annotations (AT2G41670) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019444057.1) |
| Pfam | 50S ribosome-binding GTPase (PF01926.22) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |