Ll_transcript_106846

• Id Trinity: FTRINITY_DN52915_c0_g2_i1
• Name Transcript: Ll_transcript_106846
• Sequence: CTCTTCTACTTCTTCTCTATAACTCTTCCACACGCAGCAGCAACAACATAAACCAAAAACCCTCTTCTACTTCTTCTTCTTCTTCTTGTTACAGTACAAA AATGGTGTTTCAATGAATTGAAGAAAATGAAGTTGTTATTCTAAGAAACAATGATTAAACTACAAAGAAGCTTCACCACTTGTTCCACTTCTACTTTCTC AACTTCTTCTTCTCTCTCTCTTCGCCACTTCTTCATGTTGCAATTTAGAATGCTTCAGAGTTCTCCAAACTCTTGCTTACAATACACGGCATTAGGCGTT GGGATTGGAAATAGTATCCAATGTCAAAGGTGTTTCCCCAACGTTAAGATTGGAGTGAAACCAAAAAACTATTCTAGCATTCAGCCGAGTTTTCGTTCCT TCAGCGGAACACGTGTTAGTGGTCGTGGTTCTAGGTGTATAGCAGCATCTCTTGGTGATTTTGGTTTTAGGTATCTGGGGAATGGTGTTGGAAGGAGTTT GATCAGTGATGGAGGTTTTCCGAAGAGATTTTCGTCTATTGTCAAGAAAGGAACGGATAATAAAAAGAAGGGGGTCAAAGCTCTTGCCGTTCATGGCAAA GATAAAGATGCAAGTGATGGTGCCTCTGACTCTAAAGATGTTGTTGTTAATGGGGTGACTTCGAGGAAAAGTTCGGATGAAAACAAGAAAAAACCGAAGA AGGTGTCACCGGTATCAACTGCTCCTTCGGATGCTGCAAGTGATAAGAAGGACACTAAAGTTGCTGCCAAAAAGAAGAAGCCATCAAAAAGCAAGAAAAA CAGCACGGTTGCTGGAGCGGAAGTTTCTACGAAATCTTCCAAAGGGAAGAAGACATCTAATTCTAGTGAACCTAAAGCTGATAGTGCAGTTGAAGAAGTT CCAGATAATAATGCTCCTACTAAGAATCAGACAAAGAAAAAAAGTGGGAACACTGCTCAGGCAGAACAGGTGAAATCATCCCTTGGGAAATTTACCGACA AGCCACTATATCCTCCTACTGGAAAGTCTGTGCTGGTCGTGGAGTCTGTTACAAAGGCGAAGGTCATTCAGGGATACCTTGGCGATATGTATGAAGTCTT GCCGAGCTATGGTCATGTTAGAGATTTGGCTGCAAGGTCTGGATCTGTGCGACCTGATGATGATTTTAGTATGGTGTGGGAGGTTCCGTCGCCTGCCTGG ACTCATCTGAAGAGCATCAAGGTTGCACTCAGCGGAGCAGAAAACCTTATTCTTGCGTCAGATCCCGATCGTGAGGGAGAGGCTATTGCCTGGCACATTG TCGAGATGTTACAACAACAAGGTGCTCTGCATGATAATATTTCTGTAGCAAGGGTTGTCTTTCATGAAATAACGGAAAAGGCGATAAAAGGTGCTCTGCA AGCACCACGAGAGATTGATGTCAGTTTGGTCCATGCTTACCTTGCACGGCGTGCTCTTGATTATCTGATTGGGTTTAATATTTCACCATTACTATGGAGG AAATTACCAGGTTGCCAATCAGCTGGAAGAGTTCAATCCGCTGCACTTTCACTTATATGTGATAGAGAAATGGAAATTGACGAGTTCAAACCAAAGGAGT ATTGGACTGCGGAGGCCCATTTGAAAAGAAAAGAGCCGGGGTCAAATGAGGACCTTAATTTTCCTGCTCACTTGACCCATTTGGATTCAAAAACGTTGAA TCAATTTTCAATTACTTCTAATACAGAGGCAACAGATGTCGAAAACAAAATAAACTCAGCAGAACTTCAGGTTATTAGGTTGAAAAGAAACAAAATTCGA AGAAATCCTCCTACACCTTATATAACATCAACACTTCAACAAGATGCTGCAAACAAATTACATTTCGCAGCAAGTCACACAATGAAGCTGGCTCAGAAAC TATATGAGGGAGTCGAACTTTCTGATGGTAAAGCAGTGGGTCTGATAACATACACCAGAACAGATGGATTACATATTTCTGATGAAGCTGTTACTAATAT ACGCTCCTTGATCACTGAAAGGTATGGACAAGAGTTTGCCGCACAAAGTGCACCAAAATATATTAAAAAGGTGAAAAATGCACAAGAGGCCCATGAAGCC ATTAGACCGACCGACATACAGAAGTTACCATCAATGCTTGTTGGGGTACTAGATGAAGAATCCTTGAAGCTGTACACGCTTATTTGGTCACGAACAGTTT CATGTCAGATGGAACCAGCTATCTTTGAGCAGATACAAGTTGATATTGGAAATGCTGGTGAGTCTATTATTTTACGATCTACAAGCTCAAGGGTTGATTT TGCTGGATACCGGGCAGTTTTTACGGACACTGAAACCGAAGCCGTTCAAGATAAAGGAAATGATGGATCTAATCGTGATCAATATTTTGGAGTTCTAAGT TCCTTGAAGCAAGGGGATCCATTACTACTTGTTCGAGCAGAGCTTAATCAGCACCATACGCAACCACCGCCACGTTACAGTGAAGCATCATTGGTTAAGA AGCTTGAGGAGCTTGGGATTGGAAGACCTTCGACATATGCATCCACATTGAAAGTTTTGAAGGATAGAAATTATGTGATAGTAAAAAGTCGTGTTCTGAC TCCAGAATTTCGTGGTCGCATGGTGTCGGCTTTTCTTTCTCATCATTTTTCAGAGGTCACAGACTACAGTTTCACTGCTGATATGGAAACCGAGCTTGAT AATGTTTCTGCCGGATTAACCGAATGGAAAGGCCTCCTTAGAGATTATTGGACACGGTTTAAATCATATTGTGACCGTACTTCTAATGTTCATATTCACC AGGTTGAGAAGATGTTGGAAAAAAAATTCGGGGATTATTTATTTGCTTCTCTCCCAGATCAGAGCCGGGTGTGTCCAAGTTGTATGGAAGGCACCCTGAT TTTCAAAGTGAGTAGATTTGGTTCTGGATACTTTATAGGCTGTGATCAACATCCGAGATGCAAGTATATTGCTAAAACGTTATATGGTGTAGACGAGGAT GAAGATACACCTCAGCCAAACACTACAATAGAGGAACCGAAAATCTTAGGTGTTAGCAGTGGTTCAAATGAAAAGGTTCTTTTGAAAAAGGGTCCTTACG GATTTTATATTCAACTCGGAGAAGACAGGAAAGGATACATACCTAAAAGATCCTCTGTCTCTCATATCAAGGATGTGGACTCTATCACCCTTGAAGATGC ACTTGATTTGCTAAAATACCCATTGACATTGGGTAACCATCCCGATGATGGACAACCTGTCATATTAAAGCTTGCGAGAGTTGGATTTTCTGTTCGATAT CGCCGCACAATTGCTTCGGTTCCTAAGGACATGAAGCCAAGTGAAGTGACCATTGAAAAAGCTCTTGAACTTTTGTCAGGTAAAGATGTGAGGCAATCTG GTAGACCAAAAGGAAAATCAAAATCTAAAGAAGTTGAAGCTATTGAATCCTTTTGAAATGTTCATCAATTATTTTTTTCCATATAGATTCTTCAACTGAT TTTGGAGTAGTGAATTTTGTTGTAACCTTTTTGGTTAGCTGTGTATAACTACTGTAGACCAATCTGATATTTTTTATTCATAGGAATAATTGAATATTAT TTATAAGTGAATCCAAGAGATACCAGAAATTATTGTCCAATGTATTTGGTATTTTGATTATTTGGTTGTAGAAAACCTTCATCTTATTGTGATTTCACAT TATTATCTAAGATATGGAATAGAGTAAGTGGATCCCTTCCCATCAAAA
• Tissue: flowers
• Gene name: LI_gene_29104;
• Additional information: details;

Expression of Ll_transcript_106846

FPKM

• FPAB: 8.1
• FPNAB: 10.2
• LF1: 10.7
• LF2: 9.4
• LF3: 8.3
• LF4: 9.2
• UF1: 9
• UF2: 10.8
• UF3: 8.8
• UF4: 8.5

Labels

• FPAB: abscising flower pedicels
• FPNAB   : non-abscising flower pedicels
• LF1: lower flowers stage 1
• LF2: lower flowers stage 2
• LF3: lower flowers stage 3
• LF4: lower flowers stage 4
• UF1: upper flowers stage 1
• UF2: upper flowers stage 2
• UF3: upper flowers stage 3
• UF4: upper flowers stage 4

Annotations of Ll_transcript_106846

• Blastp: DNA topoisomerase 1 from spotted fever group with 42.58% of identity
• Blastx: DNA topoisomerase 1 from spotted fever group with 42.58% of identity
• Eggnog: Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone (By similarity)(COG0550)
• Kegg: Link to kegg annotations (RF_0530)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019438806.1)
• Pfam: Toprim domain (PF01751.21)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;