| Id Trinity | FTRINITY_DN52915_c0_g2_i2 |
|---|---|
| Name Transcript | Ll_transcript_106849 |
| Sequence | CTCTTCTACTTCTTCTCTATAACTCTTCCACACGCAGCAGCAACAACATAAACCAAAAACCCTCTTCTACTTCTTCTTCTTCTTCTTGTTACAGTACAAA AATGGTGTTTCAATGAATTGAAGAAAATGAAGTTGTTATTCTAAGAAACAATGATTAAACTACAAAGAAGCTTCACCACTTGTTCCACTTCTACTTTCTC AACTTCTTCTTCTCTCTCTCTTCGCCACTTCTTCATGTTGCAATTTAGAATGCTTCAGAGTTCTCCAAACTCTTGCTTACAATACACGGCATTAGGCGTT GGGATTGGAAATAGTATCCAATGTCAAAGGTGTTTCCCCAACGTTAAGATTGGAGTGAAACCAAAAAACTATTCTAGCATTCAGCCGAGTTTTCGTTCCT TCAGCGGAACACGTGTTAGTGGTCGTGGTTCTAGGTGTATAGCAGCATCTCTTGGTGATTTTGGTTTTAGGTATCTGGGGAATGGTGTTGGAAGGAGTTT GATCAGTGATGGAGGTTTTCCGAAGAGATTTTCGTCTATTGTCAAGAAAGGAACGGATAATAAAAAGAAGGGGGTCAAAGCTCTTGCCGTTCATGGCAAA GATAAAGATGCAAGTGATGGTGCCTCTGACTCTAAAGATGTTGTTGTTAATGGGGTGACTTCGAGGAAAAGTTCGGATGAAAACAAGAAAAAACCGAAGA AGGTGTCACCGGTATCAACTGCTCCTTCGGATGCTGCAAGTGATAAGAAGGACACTAAAGTTGCTGCCAAAAAGAAGAAGCCATCAAAAAGCAAGAAAAA CAGCACGGTTGCTGGAGCGGAAGTTTCTACGAAATCTTCCAAAGGGAAGAAGACATCTAATTCTAGTGAACCTAAAGCTGATAGTGCAGTTGAAGAAGTT CCAGATAATAATGCTCCTACTAAGAATCAGACAAAGAAAAAAAGTGGGAACACTGCTCAGGCAGAACAGGTGAAATCATCCCTTGGGAAATTTACCGACA AGCCACTATATCCTCCTACTGGAAAGTCTGTGCTGGTCGTGGAGTCTGTTACAAAGGCGAAGGTCATTCAGGGATACCTTGGCGATATGTATGAAGTCTT GCCGAGCTATGGTCATGTTAGAGATTTGGCTGCAAGGTCTGGATCTGTGCGACCTGATGATGATTTTAGTATGGTGTGGGAGGTTCCGTCGCCTGCCTGG ACTCATCTGAAGAGCATCAAGGTTGCACTCAGCGGAGCAGAAAACCTTATTCTTGCGTCAGATCCCGATCGTGAGGGAGAGGCTATTGCCTGGCACATTG TCGAGATGTTACAACAACAAGGTGCTCTGCATGATAATATTTCTGTAGCAAGGGTTGTCTTTCATGAAATAACGGAAAAGGCGATAAAAGGTGCTCTGCA AGCACCACGAGAGATTGATGTCAGTTTGGTCCATGCTTACCTTGCACGGCGTGCTCTTGATTATCTGATTGGGTTTAATATTTCACCATTACTATGGAGG AAATTACCAGGTTGCCAATCAGCTGGAAGAGTTCAATCCGCTGCACTTTCACTTATATGTGATAGAGAAATGGAAATTGACGAGTTCAAACCAAAGGAGT ATTGGACTGCGGAGGCCCATTTGAAAAGAAAAGAGCCGGGGTCAAATGAGGACCTTAATTTTCCTGCTCACTTGACCCATTTGGATTCAAAAACGTTGAA TCAATTTTCAATTACTTCTAATACAGAGGCAACAGATGTCGAAAACAAAATAAACTCAGCAGAACTTCAGGTTATTAGGTTGAAAAGAAACAAAATTCGA AGAAATCCTCCTACACCTTATATAACATCAACACTTCAACAAGATGCTGCAAACAAATTACATTTCGCAGCAAGTCACACAATGAAGCTGGCTCAGAAAC TATATGAGGGAGTCGAACTTTCTGATGGTAAAGCAGTGGGTCTGATAACATACACCAGAACAGATGGATTACATATTTCTGATGAAGCTGTTACTAATAT ACGCTCCTTGATCACTGAAAGGTATGGACAAGAGTTTGCCGCACAAAGTGCACCAAAATATATTAAAAAGGTGAAAAATGCACAAGAGGCCCATGAAGCC ATTAGACCGACCGACATACAGAAGTTACCATCAATGCTTGTTGGGGTACTAGATGAAGAATCCTTGAAGCTGTACACGCTTATTTGGTCACGAACAGTTT CATGTCAGATGGAACCAGCTATCTTTGAGCAGATACAAGTTGATATTGGAAATGCTGGTGAGTCTATTATTTTACGATCTACAAGCTCAAGGGTTGATTT TGCTGGATACCGGGCAGTTTTTACGGACACTGAAACCGAAGCCGTTCAAGATAAAGGAAATGATGGATCTAATCGTGATCAATATTTTGGAGTTCTAAGT TCCTTGAAGCAAGGGGATCCATTACTACTTGTTCGAGCAGAGCTTAATCAGCACCATACGCAACCACCGCCACGTTACAGTGAAGCATCATTGGTTAAGA AGCTTGAGGAGCTTGGGATTGGAAGACCTTCGACATATGCATCCACATTGAAAGTTTTGAAGGATAGAAATTATGTGATAGTAAAAAGTCGTGTTCTGAC TCCAGAATTTCGTGGTCGCATGGTGTCGGCTTTTCTTTCTCATCATTTTTCAGAGGTCACAGACTACAGTTTCACTGCTGATATGGAAACCGAGCTTGAT AATGTTTCTGCCGGATTAACCGAATGGAAAGGCCTCCTTAGAGATTATTGGACACGGTTTAAATCATATTGTGACCGTACTTCTAATGTTCATATTCACC AGGTTGAGAAGATGTTGGAAAAAAAATTCGGGGATTATTTATTTGCTTCTCTCCCAGATCAGAGCCGGGTGTGTCCAAGTTGTATGGAAGGCACCCTGAT TTTCAAAGTGAGTAGATTTGGTTCTGGATACTTTATAGGCTGTGATCAACATCCGAGATGCAAGTATATTGCTAAAACGTTATATGGTGTAGACGAGGAT GAAGATACACCTCAGCCAAACACTACAATAGAGGAACCGAAAATCTTAGGTGTTAGCAGTGGTTCAAATGAAAAGGTTCTTTTGAAAAAGGGTCCTTACG GATTTTATATTCAACTCGGAGAAGACAGGAAAGGATACATACCTAAAAGATCCTCTGTCTCTCATATCAAGGATGTGGACTCTATCACCCTTGAAGATGC ACTTGATTTGCTAAAATACCCATTGACATTGGGTAACCATCCCGATGATGGACAACCTGTCATATTAAAGCTTGCGAGAGTTGGATTTTCTGTTCGATAT CGCCGCACAATTGCTTCGGTTCCTAAGGTATGATTACAGTTTCGGGCATTTTTTTGTCGATATTATTTCCTTCCATAATTTGGTAGTTGTGTGTGTTCAA GTCACACACACTAACATTTATAATACTAGAAAGGCT BLAST |
| Tissue | flowers |
| Gene name | LI_gene_29104; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_106849
| Blastp | DNA topoisomerase 1 from spotted fever group with 43.21% of identity |
|---|---|
| Blastx | DNA topoisomerase 1 from spotted fever group with 43.21% of identity |
| Eggnog | Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone (By similarity)(COG0550) |
| Kegg | Link to kegg annotations (RF_0530) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019438806.1) |
| Pfam | Toprim domain (PF01751.21) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |