Id Trinity | FTRINITY_DN52971_c3_g1_i6 |
---|---|
Name Transcript | Ll_transcript_106941 |
Sequence | CGAGGATACTCTCTCTCTATTGTGTGTGTTTGTGTCAATTATCGCGACCCACATCGAGGTTGTCATTGGGGTTAGTTTATTTCCTTCAATTCTCTTATCT TCATGTTGAAAACATTCAAATCCTCTTCCAATCTCACTTCACCCATGCTAATTCGTTTCAAAATCCAATCTTTTCTACTCTCCACTACTACACTTGATAA CAAGGATTTCATCAATGATAATACTATTGACACTGATTGGGAAAGATTGCTTCAACCTTTTGACCATAAACAACTCCTTAGGTCACTTCACCCCATTAGC CCAATTCAGCTCTCTAAATTATTGCAACTCCCACTAGATGTTCCTACCTCAATGGAACTGTTTCAAAAGGTTGGTGCCCAAAAGGGTTATTGCCACACCT TCAATGTGTATCACATTTTAATTCATAAGCTTGGTGCTGTTGGGGAGTTTAAGATTATAGACAATTTGTTGAAACAAATGAAGCAAGAAAAAGTTGTGTT TAAAGAATCACTTTTTATTCTGATTATGAGATGTTATGGGAAAGCTGGGTTTCCTGGCCAAGCAACAAGGCTTTTGTTGGATATGTGGACTGTTTATTAT TGTTTCCCTACTTTTAAGTCCTACAATGTTGTTTTGGAAATTCTTGTTGCTGGAGATTGTCCTAGAGTTGCACCTAATGTGTTCTATGATATGCTTAGTA GAGGTATTTCTCCGACTGTGTATACATTTGGTGTGGTCATGAAAGCATTGTGTATGATTGATGAGGTTGATTCGGCTTGTTCGCTTCTAAGGGACATGAC AAAGCATGGCTGTGTTCCAAATTCTGTCATTTACCAAACCCTTATTCACGCACTTTCGCAAAACAATAGGGTGAACGAAGCGATGAAGCTTTTGGAGGAA ATGTTTTTGATGGGCTGTGAACCTGATGCTCAGACCTTTAATGATGTTATTCATGGCTTCTGCAGGGCTGGTCGGATTCATGAAGCAGCCAAGCTGCTTG ATCGAATGCTTCTTCGGGGGTTCAGCGCTGATGCTCTAACTTATGGGTTCTTAATGCATGCGTTGTGCACCAATGGGCAAATTGATGAAGCAAGGGCCTT GCTAGATAAAATTCCCAATCCGAATACTGTGCTCTATAACACATTAATAAATGGCTATGTGGCTAGTGGGCGGTTTGATGAAGCTAAGGATCTTTTGTAC AATAACATGGTAGTTACAGGCTATGAGCCAGATACCTTCACGTTTAACATACTGATCAGTGGACTTTGCAAGAAAGGGTTTTTGGTCTCTGCTCTTGAGT TCTTACATGAGATTGAAATGAAAGGATTTGAACCCAATGTGGTCACATACACCACATTGATAAATGGTTTCTGCAAGCAAGGTCGATTAGAGGATGCAGC TGAAGTTGTGAATAGCATGTCAGCCAAGGGTCTCAGTTTAAATACTGTGGGGTACAATTGCTTGATTAGTGCTCTTTGCAAAGATGGGAGGATTCAAGAA GCTTTGCATATGTTTGGTGAAATGTCAAGCAAAGGAAGTAAACCCGACATTTATACATTCAATTCCTTAATATATGGACTATGCAGGAATGGTGAGATGG AAGAGGCCTTGGGTTTGTATCAGGACATGTTCGTGGAGGGTGTTATTGCCAACACTGTAACATACAACACACTCATTCATGCATTTCTCAGGAGAGATTC AATCCAACAAGCGTTTAAGCTTGTTGATGAAATGCTATTCAGAGGGTGCCCTCTTGACAATATTACATATAATGGCCTTATCAAAGCTCTCTGTAAAACC GGGGCAGTAGAAAAAGGATTGGGCTTGTTTGAAGAAATGCTTGGGAAAGGGATTTTTCCTAATGTTAGCTCTTGCAATATTCTGATCAACGCCTTCTGCA GAGTTGGAAAAGTAAACGACGCTCTTCAATTTCTCCGGGATATGATTCATCGTGGTTTGACACCAGACATAGTCACTTATAACTGCCTGATCAACGGTCT TTGCAAGATTGATCGTGTTCAAGAGGCTTTGAACCTTTTTAACAGGTTACAAGTTGAAGGAATCCATCCCGACGCAGTTACATACAACACACTGCTAAGT AGGCACTGCTATGAGGGTTTATCTGATGAGGCATGTTTACTTTTACATAAAGGTGTGGATAATGGTTTCATACCTAATGAAGTCACTTGGAATATATTGA TATGTCATTTTGTGAAAGAAGGGGTCAAGGGGAGTAAAATATTCTTCTAGGGTTGTTATGGTGGAATAGAAAGCTGCTTTCCTTTGAAGCCAAAACATTC CTTTCAGGTCTCTTTATTTTGCTCCTTGACCCCATTTGATTTGTGTCTTGGCTATCAATTTACTATTAGCATGGGGAATATGACTGCAGAATTTGAATGA TAAGTGAGTGGGGGCAACTAGTAATAGTGTTGATTCTTCAGAAAAAAACACCATCCTTCTCTGGATCTACCTTCTATACAACTAGAACTAGTTATAACAA CTTTGTAATATTAACATGTTCACTTTGAAATATTTGTTAAGCTTATGTGCAGCACTCTTCTCTTAAACATGTAAAGCAATAGGAAGAAGGGTCCTGGTTT AGAACATGGTTATGAAATTGAGATGCTAAATTAGCTCATCAATATTTTTCATCTGAGATCAAAGTCCATGTAGTCGATCCCACTTAGTAGGATAAATGTT TGGTTGTTGTTGTTGTAAAACTTAGATGTTGTTTTCGGGGATTTGTCCTTACAAGAACATAACATGCTTCATAATTTCAGGGAAAAGCATAATATATGAC ATTTGAAACCTAATAATCTGCGCCGAGGTGAAAATACTCATTTCGGGGTATAGCTCTTCCAGCTTGATTCGGATAATGTATAGTTTGAACTGGGTATAAT CCAGTAGTTATTTTTATTTATATATTGACTTATTTATGTTTGGTTTGTTGTTTTGTGGGTTTGAACTAGTTTGCCTTCTATATTGAAGAAGAGCATATTA AAAGTGGGGGTGCCAAAGGAGGCTGTCGAGTTTTTATTCGGTTGGGTGGAAGGGCGTGGTGGCTACCCCAAAATTCCCGAGGCAAAAGGGTCAATAAGCG CCATTCGAAGTGAGGCCTTCTTCATTCCCTTGTATGAACTTTACCTCACATATGGTGGGATTTTCAGGTTGACATTTGGACCAAAGTCCTTTCTGATTGT GTCCGATCCATCTATTGCAAAACACATCTTGCGAGACAATTCAAAGGCTTATTCGAAGGGTATCTTGGCTGAGATCCTAGAGTTTGTGATGGGGAAAGGA CTCATCCCAGCTGATGAGGAAACATGGCGAGTCAGACGACGTGTTATAGCCCCAGCATTGCATCAGAAGGTTTCGTTATTAGACTGATTATTTAAAGTTC GTGTTGAATCATTTCCAACATGTACGTGATGATATCCTGGCAGCAAAGGTCATGGATTGAACTGTTCCTTCTCAGATAAGGAATTTGTATTAATACTTTA TGTAGATAAGAATGTCTATCAACACAAACAAAACAACATAAATACATTTTTCGCTAGCCAAATTGAGTTATTTGAAACTTTTCGAATCACTAATCGATGT TCACCATTAGAATGTCATTTGTGACATGGAAAAAATAGAGCAGTATCTATGATCTCATTCATTTTATGTAATGATTAATCTCGAGAGTCGAGATGTTCAT AGCTACCCACCCGTACTTATACTTATTTCAAATCTCTGCGACAACTTTGCTATCTTGTTTCTTGATTTTGTTTTTTGAATGTGATTATAGTATGTAGCAG CTATGATTGGCCTTTTTGGACATGCTACTGATAGGCTTTGCAAGAAGCTAGATAGTGCTGCATCTGATGGAGAAGATGTTGAGATGGAGTCACTTTTCTC ACGTTTGACTTTGGACGTCATCGGCAAGGCTGTATTCAATTATGATTTTGATAGTTTAACAAATGACACGGGTATAGTTGAGGCCGTTTATACTGTCCTG AGAGAAGCAGAAGATCGAAGTGTTTCTCCAATTCCAGTGTGGGAGATCCCAATATGGAAAGACATATCACCACGTCAAAGGAAGGTTGCTTCAGCTCTCA AATTGATCAATGATGTACTTAATGATCTGATATCAATATGCAAGGAGAAATCATTTAAAAGAACTTAAAGCTAAATGGGCTCTTACAGAAAATGGTGCAA TCTTAATCCTTGTAGGCAACCCCACCTTGCAGAGAAAGAAAATGGTAGATGAAGAAGAGCTTCAGTTTCATGAGGAGTACATGAATGAAAAAGATCCAAG TATTCTTCACTTCTTGTTGGCATCAGGAGATGATGTGACAAGTAAGCAACTCCGTGACGACTTAATGACAATGCTCATTGCTGGACATGAAACGTCAGCT GCTGTTTTAACTTGGACCTTTTATCTTCTATCCAAGGAGCCAAGGGTCATGTCCAAGCTCCAAGAAGAGGTTGACTCTATAATTGGAGATCGACTTCCAA CTATTGAAGACATGAAGAAACTAAAATATGCAACTCGAGTGATCAATGAGTCATTGAGGCTTTACCCCCAACCACCGGTGTTAATCCGCCGCTCTCTCGA GAATGATCTACTTGGAGAGTATCCTATAAAAAGAGGAGAAGATATCTTCATATCGGTCTGGAACCTGCATCACAGTCCAAAACAGTGGGATGATGCTGAC AAGTTTGAACCTGAAAGATGGGCCTTAGATGGACCTAACCCTAATGAGACGAATCAAAATTTCAGGTATTTACCATT BLAST |
Tissue | flowers |
Gene name | LI_gene_29590; |
Additional information | details; |
FPAB | abscising flower pedicels |
FPNAB | non-abscising flower pedicels |
LF1 | lower flowers stage 1 |
LF2 | lower flowers stage 2 |
LF3 | lower flowers stage 3 |
LF4 | lower flowers stage 4 |
UF1 | upper flowers stage 1 |
UF2 | upper flowers stage 2 |
UF3 | upper flowers stage 3 |
UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_106941
Blastp | Pentatricopeptide repeat-containing protein At5g64320, mitochondrial from Arabidopsis with 59.91% of identity |
---|---|
Blastx | Pentatricopeptide repeat-containing protein At5g64320, mitochondrial from Arabidopsis with 59.91% of identity |
Eggnog | Pentatricopeptide repeat-containing protein(ENOG410Z7Z7) |
Kegg | Link to kegg annotations (AT5G64320) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_004508428.1) |
Pfam | PPR repeat family (PF13041.5) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |