| Id Trinity | FTRINITY_DN53152_c5_g2_i11 |
|---|---|
| Name Transcript | Ll_transcript_224240 |
| Sequence | CAATGATTTACCACTAATTCAAACCATTAGATTTATCTATAATTGATGTACGATTAGAAATAACTCTAAGATTAAATTAAAATGATTATTGTCGAAGAAA CCTCATAATTTGGGTAGAGAGGGGTTTTGCCCTAATAAAGGAGAAGAGGAGTGTGAGAAGTTAGTGAAAGATCGATCAATGATACAGGATTCGAAAGATA GAGTTGAAGAAGAAGAAGAAAGTGGTTGTGATGAGAATAGGCCTTCGAAGATATCAAAAACAAGCCACAACAACACTAATTCAGAGGCTATGAATGGAAA AGTTCAAAGGTATTTGGTAGCAATTGAATACATTGGAACTCATTTCTCTGGTTCACAACAACAACCTATTCACCGTACTGTCATCGGTGTTCTTCAGGAT GCTTTTTCTAAATTTATTGGCCAACCTATCTCTATCACTTCTTCAAGTCGTACTTTGCGTTGCGGCCCAAATGCGGTCTGATGCAGTTGCATTTCGTCTC AAATGTGGTCTGATGTAGTTGCATTGCAGCCCGTTACGGTCGCATCATTGTGATTCGGTGTCATACAATAATTGTGGTGTGATGTGGTCCATAATTTGAA ACTGCAATGGTGTGAGGGTATTATCCTGTATGTGCATTTCTAACTCAGCTCGCATATGGGATAGAAAATACACGAAGCTCCGGATTGCAACAGGATAGGA CATGCTATCTCATCTTGTCTTTGTCCACCAAATGAGCCCTAATTTACATATCTGCCATATGTCTTATTTATTTGTCTTTTATATAAGCAGGATGCTGGAG TTCATGCCTTGTCAAATGTTTGTCACGTTGATATTGAACGCATTAGCAAAAGGAAGCCCGGTGAAGTGGTCTGTCTCTCTTTCTGTCACATCTCATGCAA TTAGGTTGAAATTTACTAAGAATCGATGAACCTCTTTACTATTTATTCATTACTAACTTCTTTTTTTATGAAAACAATCATAGTTACCACCTCATGAACC TGATGTCGTTAGAAGGGCTGTCAACCATTTCTTACAGGTATCTATCTTCTTCTATTAACTCCTCACTTTTCCAATATGGTGAATCTTCTATCATTCAGAA AATGCTTCATCTTGCTACATGACGTTGGACAAGAAACTGCAATTTAGTCGTCAGTCATCAATGTTGAGATCATTTTTCATATTCATCTGAAATTCTGAAC AACAAACAATGGCCTATATATACAATTTCATTTTCATATTGATATAAATTGCAAATAACCTTCTGTCATATCCATGCTTGAAAGTGTCTCAGTCATATTT GAATGTCTACAAAGTGTGTCATGTAGAGGCCAAAGCTAGCACCACAGCTAACCCCAGTGTTATTATTTTTTGTATGTTTAGTATATATTTTGCCAATGCT TTTGTTGTTGATGCAGAAATTGTCCTTTTAAGTACAACCTTCTGATAGCTTTCTATCAATGTGGATCTTAATTTAATACTTACTATGAACTACAACTTTG TAATGCATATTGCAAGAAGATAAATGAAGTATTGAATTGCACAGAATGTACTATAAAAATCTGTCTATATAAGTTTATTACCAACTACATGTTGTGGTTG AATACAAAGTTTAAGTTACAACTTTTAAAAATCTGTGAAAATTTTATTTATTGTTGATATCTGTGATCAAAAGATCCTAACAATTCTATTTTTTTCATTT TGATTTATAAGCGTGACAGTGATGTAACCATTATTGATGTTCGATGTGTTCCATCTGATTTCCATGCCCGATATAAAGCTCTAGAACGCACGTGAGTACT GAAGATCTAGAGTTTGTTTCTTAAAATTTGAGATGCATGCATTGATTATCAGTTGTCATACATGTTCTTTTGTTATATCTAGCTCAACTGGCTTTTGTAA GATATAAGGTTGTTTTTCTTGGTGGATATTTGTTGGATTATTATGGACTGTTTGAGGGGTTTCTTGATGTATGAAGTTGTGCTTGATTAATATTGTAGTG ATAGTTAAGAATAGCACAGTAAGGTTTGTATTAGAATCTCTGAAGTCGAATACTTTTCCAGGCAGTGCCATAGAGTCCTGTTTTATTTGTCTATGATAAT TTGTAATAAATGGGAAGTTAGAGTCACAGCGACAGCTTTTGAAAGCGCATGGCTTCCATTTAGTATGTAAACTGGAGTATACGGAATGCAAGTTTGGCAA GAAATGCATTGACTAGCTTAGAGGTGAAAATTGGAAATCATATAATGCCAGAAGGCCAGTAATTAGAGAAGGAGGAAATCAGGAAACATTATAGACGAAA ACCATTAAAAGACTCAAGCTGGCCTTTCTGAAGACATGGTTTATGACAATACAATAACTTTGTTTGATCCATGTAGCTGACTCCACTTAGTGGGAAAAAG CTTAGTTTTTGCATGATAATTTTGTATGAGTGATGATTATTTGGAACTTCTGTTCAGATACTTCTATCGCTTGCTATCCGGGCCAGAGCCTTTGTCAACC TTTGAGAAAGATCGAGCATGGCATGTACCAGAGGAGCTTAATATTCGGGCTATGCAAGAAGCGTGCAGAGTTCTTGTTGGACACCATGATTTTAGTTCCT TCAGGGCATCTGGCTGTCAGGCAAAATCACCAATTAGAACTTTAGATGAACTCGGCGTCTGTGAGGTAATTCCGAGTCAATATTTTCCATCTGTAAAGGA TAGAGAACAACATAATAAAGTCAGTGATGATCTTCATGGATGCTCCAGCAACTCTGAAACTGACATCCCTCTTAGCTCTCTTGCAAGCATTGATAAAGTA ACAACATTAAGCGAAGACGTAGGATTTGGCAAAAGAAGAAGTCATCGTTGCTTGGTGGTAACAGCACGTTCACGTGCATTTCTTTACCATCAGGTTTTGT ATCTCCCTTTTAGTACAGGCTTCTAAGTTCTATACTATGCAATGTTATTCATTTTTCGTCAAAGGATTTTTGTCGTTTAGGATGTCATTTGATCTATGTC TAACCCCATCTGGTTGCAATGAGGTTTGGTTATTTATGGTTATATTTCATTTTTCTTCTAGTTACACTCCATTTTGGTCTGAATATAGATGTATTTTCAT TTTCAGGTTAGACTACTTGTTGGTGTTCTAAAAGCCGTTGGCACCGGGAATTTAACAATTTCAGATGTTGAAAGAATTTTGAATGCCAAAGATGTTACTG CTGCTAGTCCAATGGCGCCGGCATGTGGTCTCTATCTGGGAGAGGTGAAATATGATCTATCTAGTTAGTACACATTTTTGAGTTTCCTAGAAACATGCCA TGGACTCAAGTAAACCTCCATGAAGATGTCAAACCTATATACCTGAATTTCTCAATGTTAGATGTGTCATTTATGTTGGGTATATTTATGAGGGATTATT TTTTTACCCTTGTAACTTTTAATTTAATTTTCGTTGCTTGGGATTCCAGCATTACTTGCATATTGTATTTTATTTTTAAATTAAAAACAATGTAGTGAAA GATTACTTGGCCAAAAA BLAST |
| Tissue | flowers |
| Gene name | LI_gene_31177; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_224240
| Blastp | tRNA pseudouridine synthase A from Beijerinckia with 57.14% of identity |
|---|---|
| Blastx | tRNA pseudouridine synthase A from Beijerinckia with 61.67% of identity |
| Eggnog | Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs (By similarity)(COG0101) |
| Kegg | Link to kegg annotations (Bind_0498) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019424639.1) |
| Pfam | tRNA pseudouridine synthase (PF01416.19) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |