| Id Trinity | FTRINITY_DN53310_c5_g5_i1 |
|---|---|
| Name Transcript | Ll_transcript_246819 |
| Sequence | GATCAACTTATTCCAATTATTTAGATTTACCACTAATTCAAACCATTGAATTTATCTATAATTGATGATATAAGATGGGGTTAAGTCTTTTAAACTTAGT CTTGGAGTAACGTGATCCCCATGTCAAAGATATATTAAAAACTATCACTGTACTCACTCCATTGGTGGTGTAGAGGAGCGTGACTCAACTTATATATAAA GAAAAAAAGATGTCCTCACTATAAGACTTTAATGAAATGAAATAGAATATTCTTCAACTATAGGGTAAGTGACAATTGGTGGGGAAAAAGGTTAAGCTCT GTTATTTTGCCATCTATTACTATTTATAATTTTTAGTTTCTTAATTTGCAATCTGAAATTCTACTTGGACTACAATGTTATGGTTTTAGAGTCTCTACAA TGAAATAATGCCACTGCAAACTATCACATCTTAGCACAATTTTACTTACTATTGTAATAAGCATAACCACAATGGAAAGTGAACATTTTAGACTTTTAGT ATTAAATAATGGATTAGTGAAGTTATGGTAATAAGTGTTGAATCGGTGGTGGTAATAAATGATGAATGTGAGTATTCACAGGTGGGGCATGTGGTTATGG TACCATGGTGGATGTGAAACCGTTCAGGGCGAGGGTAGGGGCGGTGGGGCCGGTGCTGTTCATGAAAGGGGAAGGGTGCGGTGCGTGTTATAAGGTGAAG TGTTTGGACAAAAACATATGTACGAGACGAGCAGTGACGGTTATAATCACGGACGAGTGCCCAGGTTGTCCCTCAGACCGAACCCACTTTGATCTCAGTG GTGCTGCATTTGGGCGCATGGCTATTACTGGAGAGAATGGTCAACTCAGAAACCGTGGTCAAATTCCAGTCATTTATAGAAGAACCCCGTGTAAATACCC GGGTAAAAAAATTGCTTTCCATGTTAATGAAGGTTCCACTCCTTTTTGGCTATCACTTCTGGTTGAGTTTGAGGATGCTGAAGGAGATATTGGCTCCATG CATATACGAGAAGTATGCATCTTTCTTATGTTGTTTGATATTTAGTTCCATCAAATTTCTTCCTTTACTGCTTATTCCTTAAGTATCACAAATATATTTC TCTATATGAATAAGAATAAATTTAAAAAAAAAAGGAGAAACATGAAAAAGTGCACAAGAGAGAGAACCCTGAATCTCATGTCTGCAGAGGAATCAGATGC CTTTTCAACTAGCAGCCTTTAATATGAAATATATAAAAAAGTGACAATATTCTTAATATATTTTATAGCTAGAATATACACTTTGATTTATTTTAAGAAA ATAAAGTGTAACCAAAAGTAATATATTGCATCTTTGGAACACTGATTCTTGAACTCTGTTGCAGATTTGACCAAAAGGAACTGCCTAAACTTAAAACAAA GCATTATATCCATTTATATTTTTTCTCTAATCAAATAAATAAAATGCAACTTGCAGCATGGCTAGCCTAATATCTTAATCAATGTCTGCAGTGGACAATT CCAAATATTGCGGACGAGCCATCTTTTACACATTAGATTATTATTTACCAAAGATTGCAATTGCAAGACCCTTTTCTTTCCTATATTATCAGTGTCATTC CTCATATGATGGTGCCCATTGGCAACTAATGTTCCTCTGGTGGTGATGCATTTTCCTGTATCTGAACTCAAATCATGTGATATGTAGGACCAATGTTGAA AACGACACTTTCCCCACTTTTGTTTGTAAAAAAAAACTTACAGTTTAGGAACTTTTGGCATCTTATTAAAATTGTGTGCCTATTAGGCAAAATCAATCAA TTATATTACTAGAATATTAAACATTTGAATTGATAATGAAACACTTATCATAACAATTATTTTAAAGAAACACCAAAGCATTGATTGGATATACCAAATA TGGAACATGACAACATAAGTTTTATGCATGTACTATGTTAGGTAGGGGTCAACCTCAGTGTGTTTCATTTGCAAATTTTAACAGAATGAAATGATGACAA TGAGACTGACATTTTTTTTATGAATTTAATATGTATGTACTGACAGCGTAAGTATTTTTTATACTGTCAGCAAATCACCACCATTAATTTGTTATTCATT GTTGACTCTCAAATAAAAGTAATACAAATCAATAGTGAATGATGTGTCGACAGTGTAAAAAAATTTATACTCTCAGTGCACAAATTTTAAACTCTTTTTT TATTGTGTTGTATTTTGGTATTGGCAGGCAGGGTCTAGTGAGTGGGTGCAGATGAATCATTTATGGGGTGCAAATTGGTTCATTATTGGAGGACCTTTAA GAGGGCCATTCTCTGTTAAACTAAGCACTTCCACTGGGAGAACCCTCTCTGCTAGAGATGTTGTTCCAGGCAATTGGGTTCCAAAGGCCACTTACACCTC TCGCCTAAATTTCTACCCTTAAAAAAGCCTTTGCAATTGGTAATTAGTGAGCCATCTTTTACTCTGTTAAAGTTGGTCAAGTCTCATAGCACAAAATTAG TCTTCATGTAGCCATTTCCCTTTTTTGCTATATATAGTTTTTAACCCTTTTTTTATAGGAAAAGTATTAATTGGAGTGCAAAAGAGCATCCAATGATCCT TCTCTTTTCTTATTTTGTTGATTATGTATACCTACTTTTTATGGTGTGTGATTGTTGGTACTTGGTAGTGAGGGTCATGCAGCCTTCTCCAAAAGAGGAG AGAGAGCGTGTAGTATTGTAGTGTATTAATGTGTGTACTGGGTCTTGGCCCTTTGGGCTTTTAATGAATATGTATACTGGATCCTTCAATTGAATGAATG TCTTTAACTATGTCTCTCCTATCTTGTGATAAAC BLAST |
| Tissue | flowers |
| Gene name | LI_gene_32612; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_246819
| Blastp | Expansin-B3 from Arabidopsis with 80.29% of identity |
|---|---|
| Blastx | Expansin-B3 from Arabidopsis with 81.94% of identity |
| Eggnog | May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. May be required for rapid internodal elongation in deepwater rice during submergence (By similarity)(ENOG410YA5Q) |
| Kegg | Link to kegg annotations (AT4G28250) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019454372.1) |
| Pfam | Lytic transglycolase (PF03330.17) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |