| Id Trinity | FTRINITY_DN53335_c3_g1_i12 |
|---|---|
| Name Transcript | Ll_transcript_245798 |
| Sequence | CTCCCATCCTTAGAAAATCCACAGATTCATCGATAGTATGAATTCCGCATAAACCAGGTACCTCTTCATCTTCATTATTCATTATTCATTATTCATTATT GTTAATCATCGATTATTCCCTCATTCCGACGCGACTCTCTTTCTTCTCCAGGGTTAGGGTTAGGGTTAGGGTTTTCATTGTTCCGCTTTTACGATTTGTT TTTTGAATTGTTCCCGTGCCTTGGATCTGCATCAGGTTTCATTTCGATTTTTGTTATTATTCACATATCTATAGGATTGGCTCGTCATAATTTTATATAT GTTTCGTGTGAATTATTTTTTTGCTAATGGTTAATGTGCTAGATTTTTTTAGAGGATGACAATGAAACACAATTTTTGATATCCCTTATTGTCTGTGAGA AACTAACATTTGTTGATGTAAGACTGTAAGAGTTCCAAACTTGACCTGTGGAGTTTGGACTCGTACAATTTCTCCTTACATTACTAGACCAACAAATTCA GCGAGTGGAAAAGTTTTTTTTTAACATGTTAAGAAAAGTAATTTCCATGATTATAGCTATGACACCGGTTCTACATGTGGTATTAAGGATTTCCTTTAAC TTGAGAAGACAATTGTGCTCTTCATTATATGTTCACTTAACCTTATATGTGCTTAAAACATGGGTATAAGTTATATATTTCAGTTAAACCAAAGAGAGGA GATAGATAATTGTGCAAATAGAAGTTAGATGTAGATAACAGAACTATTATTGCAAATGAAGTTGTATTTCAGTGGCAGAGGCTTCAATCGTCATGAAAAC ACAACAAAAATCTTTAACAACTATGGGCAGAAATCCGTTCAAGACTATGTCTGCATTTTAAAGTCACCTACTATTTCCAATGGCAACCTGTTGCCATCTG TTTATCCTTTCTTTTCCATGTGGTTGTTTTCTACTTTTTATCATTCAATCCCCTTGAAAGTAAAATTTTTTTTGTCATAAAGCTATGCCTCCATTTGACA TTCTTTATGGATCAGTATTTTAGCTTATTCATTCATCGCCACCTTGTTAGCTTTGCTGCTGAGAGGGTGAATTATATTGTTTTTTAAAGCTAGAGTTGAT ATTGTGGTGTGAATGCTATAAGTGAGAGGTACATGAATATTGCGAAGAATGTGGTCCAGGGACTTGTTATCTATTTTGGGGTGTTGACTTCGGGTAAAAT GATATTTGATTGATGTGAGATGGTTGCTTGTTGAAATTTCATATACTATGCTGTTGGACTTTGCGGTTTTTCTAATTTGAAGGGAAGGTGAGGGGTTTTG TTTGGTTTGGCTTATAGATGATGTTGGATGTATGGTTGTGATGTGGACAGGGAGGAGGCAGTGGCTGGTGGTGTTGGTTGTGTTGGTGGTTTTGCTGATC AGTTGTTGTAGAGGTTAAGGAAGAAAAAGTGTTGAAAATGAGTTCAGACAGCAGGAGTCGGAGCAGAAGCAGGAGCAGGAGCCCAATGGATCGTAAGATC CGCTCTGATCGGTTTTCCCATCGTGAAGCACCTTACCGGAGAGACTCACATCGGGGTTTCAGGTTTTTTTGTTGGATTTTGACTATTTACTTACTGCTTG CTTAAGCCGCTTAGGGAGGGTAAAGAGGACTGAGACTCTGCTATGCTAGAAGAAGCTTTTAATCTTTATTGTGCCATTTGTTAAACCTTAGGCTTTGCCT TTTCATTTTTTGTTTTTGTGGTATGTCTTGTATGATTACTTTGGAACCTAAATCTGTGTTTCCTTTCTCTGAGATGGTTTGTTTTGCTTTTTAGCTACAA AAATACCGTAGTGGCTGTACTGAGCCATGTGACACTAGCATTGTATGCTAATATTTTTCAAATAGTAACACTAATTTTATTATTTTTGGTCAGCCGAGAC AATTTATGCAAGAACTGCAAGAGGCCTGGTCATTATGCAAGAGAATGCCCTAATGTTGCAATTTGCCACAATTGTGGCCTCCCTGGGTATGGTCACTTAT TCTTTTGTTGTTAAGAACTGTGCATGCTATTCCACAATGTCCTGCTTGCTATTAACTATAATAGTTTCAGATGGTAAAATTATATGATATATGCCAATAA GCATTATGCCGGAGTAGTTAGTTTTTATGATTCTACATTTCTACTTGTGAATGCTTGATCAGGCACATTGCTTCTGAATGCTCCACAAAATCGCTGTGTT GGAATTGCAAGGAACCTGGTCACGTGGCCAGTAACTGTCCAAATGAAGGCATTTGCCACACCTGTGGTAAAGTTGGACACCGAGCTAGAGAGTGCTCTGC TACTCCAATGCCTCCAGGGGACTTAAGGTTGTGCAACAACTGTTATAAGCAGGGCCACATTGCAGTTGAATGTACAAATGAGAAGGCATGCAACAACTGT AGGAAGACTGGCCACCTGGCACGTGATTGTCCAAATGACCCCATTTGCAACTTGTGCAATGTTTCTGGGCATGTGGCTAGACAGTGTCCAAAAGCAAATG ATCTTGGAGAACGCTTTCGTGGCGGTGGAGGTGGCGGTGGAATTCGTGGCGGTGGTTACCGAGACCGAGATGTTGTATGCAGGAACTGCCAGCAGTTGGG TCACATGAGTAGGGATTGCATGGTGCCCTTGATGATTTGTCACAATTGTGGGGGGCGTGGCCACCTGGCTTATGAATGCCCTTCGGGCCGGATGATGGAT CGATACCCAAGGAGGTACTGATGGATGACAAATTTATGTGTAAGGTTATCATTGTTGTTTATGTGGACCTGGTTTATTTTCTTTGATTTTCTCTCAGAGC AGATTGTGGATTCTTGATAGTGTACGTTTTTTGTTGCTATGTTTTACTTGGTCGGAATAAGAATGATAAGAGATACTGTATTGTGTGCATTGTATTACCC TATTTCCAGATGATGCTATTTGTTGCTATTGGTCCACTTCGAGCTTTTCGGGTAATCTTGTTTTTTTGGCTACACTTTTCTACTGTCATGTTAAAGCTAT TTTAAAGGATAATTTATATTGGAAATTATTTTTTG BLAST |
| Tissue | flowers |
| Gene name | LI_gene_32835; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_245798
| Blastp | ATP-dependent RNA helicase glh-4 from Caenorhabditis with 35.56% of identity |
|---|---|
| Blastx | Zinc finger protein GIS2 from Saccharomyces with 31.07% of identity |
| Eggnog | purine NTP-dependent helicase activity(ENOG410XNTI) |
| Kegg | Link to kegg annotations (CELE_T12F5.3) |
| CantataDB | Link to cantataDB annotations (CNT0002751) |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019438188.1) |
| Pfam | Zinc knuckle (PF13917.5) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |