| Id Trinity | FTRINITY_DN53544_c1_g2_i1 |
|---|---|
| Name Transcript | Ll_transcript_182372 |
| Sequence | ACTGGTATCAGTATAATGTTTTCAATTGATGTTCCTTCATCTTGTCTGTTACGGTTAAACCAAGGGTGGCTTATGGTTGTCTGGCCTTTTTTAAATGCAC GCAGAAGGCCTAGGAAGTGAATTGAAAGTTGGGCAACTTCTGCAGGGGCTGGTCAGAAAAATTGATAAAGTTCGTAAAGTGGTTTACTTGAGTTCTGACC CTGATACATTGTCCAAAAGTGTGACCAAGGATCTGAAAGGTCTATCAATTGATCTTCTAGTTCCAGGAATGATGGTCAATGCCCGTGTGAAGTCAATCCT TGAGAATGGTGTCATGTTATCATTTCTCACATACTTCACTGGAACTGTTGATATTTTTCATTTGCAAAACATTTATTCAGCCTCAAACTGGAAGGATAAG TACAGTGAATCTCTGAAGGTTATTGCTCGTATATTGTTCATTGATCCATCAAGTAGAGCTGTTGGTTTGACACTGAATCCACATCTTGTTCAGAACAAGG CCCCTCCTTCTCATGTTAAAATTGGAGATATATATGATGACTCAAAAGTTGTCAGGGTGGATAAAGGATCAGGACTACTGCTTGAGGTTCCATCAATTCC AGAGTCAACTCCTGCTTTTGTCAGCATATCTGAAATTGCTGAAAAGGAGATCAAAAAGCTTGAGAAGATGTACAAAGAAGGGAATCATATCCGAGTTCGA ATTCTTGGGCTAAGGCATTTGGAAGGACTTGCTACAGGAGTTTTGAAGACTAGTGCTCTGGAAGAAGTAGTGTTTACGCATTCTGATGTCAAGCCAGGAA TGGTGGTGAAGGCTAAGATTCTTTCAGTTGATAGCTTTGGTTCTATTGTGCAAATTCCTGGTGGTGTGAAGGCACTTTGTCCACTTGCTCATATGTCTGA ATTGGATATTGCAAAGCCTGGAAAAAAATTCAAGGTGGGAGCTGAATTGGTTTTCCGTGTGCTTGGTTGCAAATCAAAAAGAGTGACAGTGACACACAAG AAAACTCTTGTGAAATCAAAGCATGCGATTATTAGTTCATATGGGGATGCTACTGATGGTTTGATAAGTCATGGATGGATAGCAAATATCGAATTGCATG GGTGCTTTGTACGGTTTTACAATGGGGTCCAAGGTTTTGCTCCTAGATCTGAGCTTGGATTAGAGCCAGGAGTCGATCCTGGTACAGTGTATAATGTTGG ACAAGTAGTCAAATGCCGGGTAATTAGCTCCATTCCTGCTTCACGGAGGATCAATCTTAGTTTCATAATAAAGCCAACAAGGGTTGTTGAAGGTGATACA GTTAGGTTGGGCAGTCTTGTTTCAGGAATTGTTGATCGAGTAACAGCCAATGCAGTAGTTGTTCATGTTAATGCAAGTGGTATCTCATGGGGTACAATAT CTACTGAACACTTGGCAGATCATCATGGGCAAGCTAATTCTATGAAGTCAAAATTGAAACCTAAATACAATTTTGATCAACTTCTGGTTCTAGATATTAA GGGGAACAATTTGATTCTGTCTGCTAAAGCTTCCCTTATTAAATATGCTCAACATATTCCTGCTGATATCAGTCAGATGCAACCCAACTCAGTTGTGCAT GGCTATATTTGTAACCTAATTGAGACAGGCTGCTTTGTCCGTTTCCTTGGTCAATTAACTGGTTTCGCTTCAAGAAAAATGGCTGCAGATGATCAGAAAA CCAATATTTTGGATGCTTATTATGTTGGGCAATCAGTTCGCAGTAATGTATCCAATATAAGTAGTGAAACTGGTAGAGTGACACTCTCTCTAAAGCAGAC GTCATGTTCTTCTACAGATGCATCATTTATTCAAGACTACTTTCTTATGGATGAAAAGATTGCTAAGTTGGAGTACTTGGGCTCTGGTGCATCTGATTTG AAGTGGGATGAGGGATTTAACATTGGTACAGTTGTTAAAGGTAAAGTTGCGGATGTTAAAGATGTGGGAGTTGTTATAAGCTTTGAGAAGTACAATGATG TTATTGGTTTTATCACCAATTACCAGTTGGCTGGCACCACAGTGGAGAAAGGCTCTGTTGTGGAAGCATTGGTTCTTGATATTGTGAAGGCAGAACCGCT TGTTGATTTAACTCTAAAACCAGATTTCTTTAAAAAATCTAAAGAACGAAGTTCCACAAGTAAAACCAACAAGAAGAAACGTCGAAGAGATGCATCGAAG GACTTGGTTTTGCATCAGTCAGTGAATGCAGTGGTCGAAATTGTGAAAGAAAATTACTTGGTTCTATCGATTCCGGAGAATAATTACACTATTGGATATG CATCCATATCTGACTATAATACTCAAAAGTTTCATAGGAAACAATTTCAAAATGGACAAAGTGTTACGGCCACTGTTATGGCTCTTCCAAGCCCGGAATC ATCAGAAAGGTTACTTTTACTTCTTAATGAGGTCAACGAGACATCTAGCTCTAAACGGTCCAAGAAGAAGTCTACCCATCAAGTGGGATCTTTGGTTGAG GCAGAGATTATTGAAATCAAATCTCTTGAACTCAAATTGAAGTTTGGCTTTGGTTTGCATGGTCGGGTTCACATAACAGAGGTACATGATGCAAATGATT TAGAAAATCCATTCTCTAGTTACAGAATTGGGCAAACACTGACCGCAAGGATTGTTGCAAAGCCTAATGAAAAAAGTGGAAAACGGATGGGTTCACAGTG GGAGCTATCAGTCAGACCTAAACTGATTGCAGGATCTGGTGATATAGTAGACATTGTATCTGGAGATCTTGACTTTAAAATTCGGCAATCTGTGGCTGGT TATGTGTACAAGGTAGAAAACGAATGGGTCTGGTTGACATTATCACGGAATGTGAGGGCTCAACTATACATTCTTGATAGTGCTAGTGAACCGAGTGAGC TTGAGGATTTCCAAAATCGATTTCATGTTGGGAAACCTGTTTCTGGTCATGTTCTGACTATCAACTTGGAGAAAAAGCTACTGCGGTTGGTTCTACGTCC CTTTTCTGCTCTCCCAGGTGCAATTAGTGAGGAGCTGCAAGTGGATGGTATCAATAAGGAATTAACAGCATACATTCACAAAGGAGATGTTTTAGGTGGA AGGATTTCCAAAATACTTCCAGGTGTTGGTGGATTGCTTGTTCAAGTTGGTCCTCATATATATGGAAAAGTACATTTTACAGAACTTACAGATACATTGG TGCCCGACCCTTTGTCTGGATATCATGAAGGGAAGTTTGTGAAATGTGTAGTTCTTGAAATCAGTCACACTGTTACGGGTACTGTTCACATTGATTTGTC CTTACGTCCTTCAAATGGGATGCTGTCTGAGGATTCCGAAGATGCTCACAGCATTGTGGATCTTAATAGCAAACCTGTGGAAAAGATTGAGGATCTTCAT CCTGATATAATCGTAAAGGGTTATGTTAAGAGTGTCACACCAAAAGGATGTTTCATTATGCTCTCACGAAAAATTGATGCCAAAATTCTTCTATCGAATC TGTCTGACGAATATGTTGATGATCTTGAGAAAGAATTTCCTGTTGGAAAGCTTGTAACTGGAAGGGTTATATCTGTGGAGCCTCTTTCTAGTCGCGTTGA AGTTACATTGAAGACGACAAGTGGTTCCAGTAAATCCAAGTCTGTGAATATTGATTTCAGTAAATTTCACATTGGAGATGTCATATCTGGCAGGATTAAG CGGGTTGAGTCATTTGGTTTATTTGTTGCAATTGACAACACTGACATGGTTGGATTGTGCCATATCTCAGAGGTTTCTGATGACCGTATTGATGACATTG AATCAAAGTTTAGAGCTGGAGAGAAAGTAAATGCCAGAATATTGAAGGTGGATGAAGAAAGACACAGAATTTCTCTGGGAATGAAGAGTTCGTATATGGG AGATGATTCTGATCTTGAAATGACTTCTGAGCAAGGTTCAGAAGAAGATCCTGTTCCAGATAGTTCTTTGCTGGAAACCTATAATAAAGATATTGAAGAT GATCAAATCCCAATTCTTTCACAAGCAAAAGAAAGGGAATCTATCCCTCCACTTGAAGTTGTGCTTGATGACCTTGATGAATTTGATGTCAGTAACAATA ATACTCAAAATGAAGTACAAGCAAATGAAAAAGCCACTATAGATGAAAAGCAGAAGAAGCGTGAAAAAATAAAGGCAAAGCAGGAGAGGGAGAAACAAAT AAGGGTTGCTGAGGAAAGGTTACTGGAGGAGGATATACCAAGAACAGCTGATGAGTTCGAAAAGGTGGTCAGAAGCTCTCCGAACAGCAGTTTCATCTGG TTAAAGTACATGGACTTCATGATTTCTCTGGCTGATGTTGAGAAAGCCCGCTCAATTGCTGAAAGGGCTTTGAGGACAATAAATATCCGCGAAGAGAATG AGAAGCTCAACATCTGGAAGGCCTACTTCAATTTGGAAAATAAATTTGGAAACCCTAAAGAGGAGGCCATAATGAAAGTCTTCCAAAGAGCTTTACAGTA CAATGATCCCAAAAAAGTCCATCTAGCACTTTTGGGAATGTATGAAAGGACTGAGCAGCATGATTTAGCTGATGAACTCTGCAATAAAATGACAAAGAAG TTCAAGCATTCGTGCAAAGTATGGTTGAGGTCTGTACAAAGCCTTTTGAAGCAAAGGCGAGATGGAATTCAAGCCATTATCAATCGTGCATTGTTAAGCC TTCCCCGACATAAGCACATTAAATTCATTTCTCAGGCAGCTATTCTTGAATTCAAGATCGGGGTTCCTGATCGGGGTCGATCTCTGTTTGAAGGAATTTT ACGGGAATACCCAAAGAGAACAGACTTGTGGAGTGTTTATCTTGATCAAGAAATTCAACTCAAAGATCCCGATGTAATTCGCGCACTGTTTGAAAGGGCA ATTAGTCTAAGTCTTCCAGCTAAAAAGATGAAGTTCTTATTTAAAAAGTATCTCGAATATGAAAAGTCCCAAGGCGATGAAGAACGAATCGAATCGGTGA AAGGGAAAGCAATGGAATATGTTGAACGTACTGTGTCTTAAGGCAAGATTCAGCATTGAGGTTGTAGGCATTATTGAGTTGCTGGAGATCTGGAGACAAT GTGTTGTGTTTGTTAAGGGCATGGTAATGAAGCTGTAGGCATTCTAAGTCATTCTCTAACGTGATTTAATCTTTGTTGATGGTTCTAAATTTAGTGATTC TGACACTACTTAATGGTGCTAATTGAGATATCAACTGCATTAAGTGTATGGATTAAAGAGAGCTTATAAGCTAAAATGGAGATCTTATTAGTTGAAATGT AGACCATTTTGATCTGTCATTGGCCCAATTTTTGTTTTTCAGTTTGGGCCATAATCACTTGTTTTGACACTTAGGTTCTTGGTATTCAAATGATATTGTT TTTGGGGTTTACATGGATTATTATGTCAGACAATGTTGTAAGGTTTTGATAGTGTTTAATAACTTAATTTAGAGAATGTCACAATTATTCTATATATTCA CTTTTGTTTTGTTTGAAAATCTGTTAACTTGTTACTTTCTTCGGCAAGGTATGTAGATTTGATTTTGTTCTGTTAACAACGTTTTGTTGAGATTGATGTG ACACTTCATGTTCTCTAAAGCAGTGTTATTTGCAATAAAAGTGCA BLAST |
| Tissue | flowers |
| Gene name | LI_gene_34643; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_182372
| Blastp | rRNA biogenesis protein RRP5 from Arabidopsis with 61.1% of identity |
|---|---|
| Blastx | rRNA biogenesis protein RRP5 from Arabidopsis with 60.48% of identity |
| Eggnog | thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence (By similarity)(COG0539) |
| Kegg | Link to kegg annotations (AT3G11964) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019434480.1) |
| Pfam | S1 RNA binding domain (PF00575.22) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |