Ll_transcript_182373

• Id Trinity: FTRINITY_DN53544_c1_g2_i2
• Name Transcript: Ll_transcript_182373
• Sequence: TTTCTCTCTAAACCCTGCTTTCACTCTCTCTGTGTTCCGCTTCAAGCCAGTAACTAGCAAGTAACTGCTCTGAGAATCAGAGACATGGCACCACATTCTA AAACCTCACACAACAACAAGAACTCAGAAAACAAGCCAAAAATCGATAAATCCTCTAAGAAAATTTCCAAACCTAAACGGGACGATGCTGCTGCCACAAC TGCTAAGTCTTCAGCACTCGCTTTGCAGCTCCAAGACGAAGTCCCCGATTTTCCTCGAGGTGGACCTGTTACTGGGAAGCGAAGGAACGTTAGAGAAGAT TATGATGATTCTGACGGTGATAATTACTCGAGAAAGAAGCAGAATAAGAAGAAGGGTAGTAATTTGTCGAAGAAGAATGCTGAACCTGAAGATGATTGGG GCTCGCTTTCAAGTGATACTATCACTGGGAAACTACCTAGACGTGTGAATAAAATTACTCTCAAGAATATAACTCCTGGAATGAAGCTTTGGGGAGTTGT TGTTGAAGTAAATGCGAAAGACCTTGTAGTTAGTTTACCTGGGGGTTTACGTGGTTTAGTTCATGCTTCAGATGCAGTGGATCCTATTTTCGATGACAAA ATCGAGGTTGGGGAAAGTTTTCTTTCTACTGTATTTTCTGTTGGGCAGCTGGTTTCTTGTGTGGTTCTGAAATTGGATAATGACAAGAAAGAGAAAGGAA CCAGAAAAATTTGGCTTTCGTTGCGTCTTTCATTGCTGCACAAGAACTTCAACCTAGATGTTGTCCAGGCAGGCATGGTCCTTGCTGCATATGTGAAAAG TATTGAAGATCATGGTTACATTCTTCATTTTGGTCTGCCTTCTTTCACGGGGTTCTTGCCGAAAAATAGCTCAACTGAAGGCCTAGGAAGTGAATTGAAA GTTGGGCAACTTCTGCAGGGGCTGGTCAGAAAAATTGATAAAGTTCGTAAAGTGGTTTACTTGAGTTCTGACCCTGATACATTGTCCAAAAGTGTGACCA AGGATCTGAAAGGTCTATCAATTGATCTTCTAGTTCCAGGAATGATGGTCAATGCCCGTGTGAAGTCAATCCTTGAGAATGGTGTCATGTTATCATTTCT CACATACTTCACTGGAACTGTTGATATTTTTCATTTGCAAAACATTTATTCAGCCTCAAACTGGAAGGATAAGTACAGTGAATCTCTGAAGGTTATTGCT CGTATATTGTTCATTGATCCATCAAGTAGAGCTGTTGGTTTGACACTGAATCCACATCTTGTTCAGAACAAGGCCCCTCCTTCTCATGTTAAAATTGGAG ATATATATGATGACTCAAAAGTTGTCAGGGTGGATAAAGGATCAGGACTACTGCTTGAGGTTCCATCAATTCCAGAGTCAACTCCTGCTTTTGTCAGCAT ATCTGAAATTGCTGAAAAGGAGATCAAAAAGCTTGAGAAGATGTACAAAGAAGGGAATCATATCCGAGTTCGAATTCTTGGGCTAAGGCATTTGGAAGGA CTTGCTACAGGAGTTTTGAAGACTAGTGCTCTGGAAGAAGTAGTGTTTACGCATTCTGATGTCAAGCCAGGAATGGTGGTGAAGGCTAAGATTCTTTCAG TTGATAGCTTTGGTTCTATTGTGCAAATTCCTGGTGGTGTGAAGGCACTTTGTCCACTTGCTCATATGTCTGAATTGGATATTGCAAAGCCTGGAAAAAA ATTCAAGGTGGGAGCTGAATTGGTTTTCCGTGTGCTTGGTTGCAAATCAAAAAGAGTGACAGTGACACACAAGAAAACTCTTGTGAAATCAAAGCATGCG ATTATTAGTTCATATGGGGATGCTACTGATGGTTTGATAAGTCATGGATGGATAGCAAATATCGAATTGCATGGGTGCTTTGTACGGTTTTACAATGGGG TCCAAGGTTTTGCTCCTAGATCTGAGCTTGGATTAGAGCCAGGAGTCGATCCTGGTACAGTGTATAATGTTGGACAAGTAGTCAAATGCCGGGTAATTAG CTCCATTCCTGCTTCACGGAGGATCAATCTTAGTTTCATAATAAAGCCAACAAGGGTTGTTGAAGGTGATACAGTTAGGTTGGGCAGTCTTGTTTCAGGA ATTGTTGATCGAGTAACAGCCAATGCAGTAGTTGTTCATGTTAATGCAAGTGGTATCTCATGGGGTACAATATCTACTGAACACTTGGCAGATCATCATG GGCAAGCTAATTCTATGAAGTCAAAATTGAAACCTAAATACAATTTTGATCAACTTCTGGTTCTAGATATTAAGGGGAACAATTTGATTCTGTCTGCTAA AGCTTCCCTTATTAAATATGCTCAACATATTCCTGCTGATATCAGTCAGATGCAACCCAACTCAGTTGTGCATGGCTATATTTGTAACCTAATTGAGACA GGCTGCTTTGTCCGTTTCCTTGGTCAATTAACTGGTTTCGCTTCAAGAAAAATGGCTGCAGATGATCAGAAAACCAATATTTTGGATGCTTATTATGTTG GGCAATCAGTTCGCAGTAATGTATCCAATATAAGTAGTGAAACTGGTAGAGTGACACTCTCTCTAAAGCAGACGTCATGTTCTTCTACAGATGCATCATT TATTCAAGACTACTTTCTTATGGATGAAAAGATTGCTAAGTTGGAGTACTTGGGCTCTGGTGCATCTGATTTGAAGTGGGATGAGGGATTTAACATTGGT ACAGTTGTTAAAGGTAAAGTTGCGGATGTTAAAGATGTGGGAGTTGTTATAAGCTTTGAGAAGTACAATGATGTTATTGGTTTTATCACCAATTACCAGT TGGCTGGCACCACAGTGGAGAAAGGCTCTGTTGTGGAAGCATTGGTTCTTGATATTGTGAAGGCAGAACCGCTTGTTGATTTAACTCTAAAACCAGATTT CTTTAAAAAATCTAAAGAACGAAGTTCCACAAGTAAAACCAACAAGAAGAAACGTCGAAGAGATGCATCGAAGGACTTGGTTTTGCATCAGTCAGTGAAT GCAGTGGTCGAAATTGTGAAAGAAAATTACTTGGTTCTATCGATTCCGGAGAATAATTACACTATTGGATATGCATCCATATCTGACTATAATACTCAAA AGTTTCATAGGAAACAATTTCAAAATGGACAAAGTGTTACGGCCACTGTTATGGCTCTTCCAAGCCCGGAATCATCAGAAAGGTTACTTTTACTTCTTAA TGAGGTCAACGAGACATCTAGCTCTAAACGGTCCAAGAAGAAGTCTACCCATCAAGTGGGATCTTTGGTTGAGGCAGAGATTATTGAAATCAAATCTCTT GAACTCAAATTGAAGTTTGGCTTTGGTTTGCATGGTCGGGTTCACATAACAGAGGTACATGATGCAAATGATTTAGAAAATCCATTCTCTAGTTACAGAA TTGGGCAAACACTGACCGCAAGGATTGTTGCAAAGCCTAATGAAAAAAGTGGAAAACGGATGGGTTCACAGTGGGAGCTATCAGTCAGACCTAAACTGAT TGCAGGATCTGGTGATATAGTAGACATTGTATCTGGAGATCTTGACTTTAAAATTCGGCAATCTGTGGCTGGTTATGTGTACAAGGTAGAAAACGAATGG GTCTGGTTGACATTATCACGGAATGTGAGGGCTCAACTATACATTCTTGATAGTGCTAGTGAACCGAGTGAGCTTGAGGATTTCCAAAATCGATTTCATG TTGGGAAACCTGTTTCTGGTCATGTTCTGACTATCAACTTGGAGAAAAAGCTACTGCGGTTGGTTCTACGTCCCTTTTCTGCTCTCCCAGGTGCAATTAG TGAGGAGCTGCAAGTGGATGGTATCAATAAGGAATTAACAGCATACATTCACAAAGGAGATGTTTTAGGTGGAAGGATTTCCAAAATACTTCCAGGTGTT GGTGGATTGCTTGTTCAAGTTGGTCCTCATATATATGGAAAAGTACATTTTACAGAACTTACAGATACATTGGTGCCCGACCCTTTGTCTGGATATCATG AAGGGAAGTTTGTGAAATGTGTAGTTCTTGAAATCAGTCACACTGTTACGGGTACTGTTCACATTGATTTGTCCTTACGTCCTTCAAATGGGATGCTGTC TGAGGATTCCGAAGATGCTCACAGCATTGTGGATCTTAATAGCAAACCTGTGGAAAAGATTGAGGATCTTCATCCTGATATAATCGTAAAGGGTTATGTT AAGAGTGTCACACCAAAAGGATGTTTCATTATGCTCTCACGAAAAATTGATGCCAAAATTCTTCTATCGAATCTGTCTGACGAATATGTTGATGATCTTG AGAAAGAATTTCCTGTTGGAAAGCTTGTAACTGGAAGGGTTATATCTGTGGAGCCTCTTTCTAGTCGCGTTGAAGTTACATTGAAGACGACAAGTGGTTC CAGTAAATCCAAGTCTGTGAATATTGATTTCAGTAAATTTCACATTGGAGATGTCATATCTGGCAGGATTAAGCGGGTTGAGTCATTTGGTTTATTTGTT GCAATTGACAACACTGACATGGTTGGATTGTGCCATATCTCAGAGGTTTCTGATGACCGTATTGATGACATTGAATCAAAGTTTAGAGCTGGAGAGAAAG TAAATGCCAGAATATTGAAGGTGGATGAAGAAAGACACAGAATTTCTCTGGGAATGAAGAGTTCGTATATGGGAGATGATTCTGATCTTGAAATGACTTC TGAGCAAGGTTCAGAAGAAGATCCTGTTCCAGATAGTTCTTTGCTGGAAACCTATAATAAAGATATTGAAGATGATCAAATCCCAATTCTTTCACAAGCA AAAGAAAGGGAATCTATCCCTCCACTTGAAGTTGTGCTTGATGACCTTGATGAATTTGATGTCAGTAACAATAATACTCAAAATGAAGTACAAGCAAATG AAAAAGCCACTATAGATGAAAAGCAGAAGAAGCGTGAAAAAATAAAGGCAAAGCAGGAGAGGGAGAAACAAATAAGGGTTGCTGAGGAAAGGTTACTGGA GGAGGATATACCAAGAACAGCTGATGAGTTCGAAAAGGTGGTCAGAAGCTCTCCGAACAGCAGTTTCATCTGGTTAAAGTACATGGACTTCATGATTTCT CTGGCTGATGTTGAGAAAGCCCGCTCAATTGCTGAAAGGGCTTTGAGGACAATAAATATCCGCGAAGAGAATGAGAAGCTCAACATCTGGAAGGCCTACT TCAATTTGGAAAATAAATTTGGAAACCCTAAAGAGGAGGCCATAATGAAAGTCTTCCAAAGAGCTTTACAGTACAATGATCCCAAAAAAGTCCATCTAGC ACTTTTGGGAATGTATGAAAGGACTGAGCAGCATGATTTAGCTGATGAACTCTGCAATAAAATGACAAAGAAGTTCAAGCATTCGTGCAAAGTATGGTTG AGGTCTGTACAAAGCCTTTTGAAGCAAAGGCGAGATGGAATTCAAGCCATTATCAATCGTGCATTGTTAAGCCTTCCCCGACATAAGCACATTAAATTCA TTTCTCAGGCAGCTATTCTTGAATTCAAGATCGGGGTTCCTGATCGGGGTCGATCTCTGTTTGAAGGAATTTTACGGGAATACCCAAAGAGAACAGACTT GTGGAGTGTTTATCTTGATCAAGAAATTCAACTCAAAGATCCCGATGTAATTCGCGCACTGTTTGAAAGGGCAATTAGTCTAAGTCTTCCAGCTAAAAAG ATGAAGTTCTTATTTAAAAAGTATCTCGAATATGAAAAGTCCCAAGGCGATGAAGAACGAATCGAATCGGTGAAAGGGAAAGCAATGGAATATGTTGAAC GTACTGTGTCTTAAGGCAAGATTCAGCATTGAGGTTGTAGGCATTATTGAGTTGCTGGAGATCTGGAGACAATGTGTTGTGTTTGTTAAGGGCATGGTAA TGAAGCTGTAGGCATTCTAAGTCATTCTCTAACGTGATTTAATCTTTGTTGATGGTTCTAAATTTAGTGATTCTGACACTACTTAATGGTGCTAATTGAG ATATCAACTGCATTAAGTGTATGGATTAAAGAGAGCTTATAAGCTAAAATGGAGATCTTATTAGTTGAAATGTAGACCATTTTGATCTGTCATTGGCCCA ATTTTTGTTTTTCAGTTTGGGCCATAATCACTTGTTTTGACACTTAGGTTCTTGGTATTCAAATGATATTGTTTTTGGGGTTTACATGGATTATTATGTC AGACAATGTTGTAAGGTTTTGATAGTGTTTAATAACTTAATTTAGAGAATGTCACAATTATTCTATATATTCACTTTTGTTTTGTTTGAAAATCTGTTAA CTTGTTACTTTCTTCGGCAAGGTATGTAGATTTGATTTTGTTCTGTTAACAACGTTTTGTTGAGATTGATGTGACACTTCATGTTCTCTAAAGCAGTGTT ATTTGCAATAAAAGTGCA
• Tissue: flowers
• Gene name: LI_gene_34643;
• Additional information: details;

Expression of Ll_transcript_182373

FPKM

• FPAB: 1.5
• FPNAB: 5
• LF1: 3.8
• LF2: 2.7
• LF3: 2.8
• LF4: 1.8
• UF1: 1.3
• UF2: 2.5
• UF3: 3.7
• UF4: 0.9

Labels

• FPAB: abscising flower pedicels
• FPNAB   : non-abscising flower pedicels
• LF1: lower flowers stage 1
• LF2: lower flowers stage 2
• LF3: lower flowers stage 3
• LF4: lower flowers stage 4
• UF1: upper flowers stage 1
• UF2: upper flowers stage 2
• UF3: upper flowers stage 3
• UF4: upper flowers stage 4

Annotations of Ll_transcript_182373

• Blastp: rRNA biogenesis protein RRP5 from Arabidopsis with 60.31% of identity
• Blastx: rRNA biogenesis protein RRP5 from Arabidopsis with 59.79% of identity
• Eggnog: thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence (By similarity)(COG0539)
• Kegg: Link to kegg annotations (AT3G11964)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019434480.1)
• Pfam: S1 RNA binding domain (PF00575.22)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;