Id Trinity | FTRINITY_DN53571_c3_g1_i9 |
---|---|
Name Transcript | Ll_transcript_180124 |
Sequence | GTGCAACCCGAGTTCTTTACAGACAACAATTTAAAACATCATGCCTTAGACTATTTGCTTATTCATGTTCCTTGTTAGAAAAATTGAAGTTATGATTGGC CAGCAAGAAGGGTGAATAAGTAATTACAAGTGTGTATTTTCTATTTTGTTTTGTTTGTTTCATTGCAGAATCTTTGCTCTGCCACGGAATGTTGCAATTT GGCTTTTTATGATAATTATTGGTGGTTCATCCATGTAACTATATTTGTTTGTAGCCCCTTAATGCATTTGAGTTGATTATTGAATATTGATAATGATTTT GAAGTCTTTTACAGAAGCAAATCTCAGTTACTTTATGAAGATTTAAACTTGAATTAGATGGGTTGTGGCTGAGATAGTAAGATTTGATTTTGGGAATTGG ATTCTGGAGTGTGACTAGGCAATATGATATTTTTAATGGCATAGCATAATCTATGGCTGTTGCTCTTGGCAGAATGCTTCCACTGGTTTATGGCTGCACT AAATTGGAACTTTATGTGGTATTTAAAGTGCATATCTTGCTTTAAAATCTTTTTGCGTATACCACATTTCTAGTTTGAAAAGATTAAGTCGAATTTGTTT TTAACAAGTTTTTGGAGATGCAATATTTTATTATTTGTCAATTTTTCGTTTAACCAGCAAATTCCAATTGTCGGTATGGGCTATGGAGCTATGGGTAGTT GCTAATAATTCCTTAATTCAATATGTGCATCATCCATGTTTGAAATTTGAAAATTAGGGACAAATGCAAGTCAGTTGGCAGTTGTGGCATTCTCCAGACT ACAAAAGGAGATTGCTAAAGATGGTAGAGAACCGAATATGGTGTCCAATGGGGTGCATAACAAATCCGTTTCAAGAAAAGGTTCCGATGCAGGATCCTCT GCCACAACAAAAGAGATGAGTGCCCTGTCACAGTTCTGTGTGGATCTCACTGAACGTGCGAGCGAAGGGCTAGTCGATCCAGTCATCGGCCGAGAAGTTG AAGTTCAGAGAATTATTCAAATACTAGGCCGGAAAACAAAAAGCAATCCCATTCTTCTTGGTGAAAGTGGTGTCGGAAAAACAGCTATTGCGGAGGGGCT GGCAATTCATATTGCTCGGGCGGATATTGCTCCTTTTTTATTGACAAAGCGTATCATGTCGTTGGATGTTGCAATGTTAATGGCTGGGGCAAAAGAGAGG GGAGAACTAGAGGAACGAGTTACGAAATTAATAAAAGAGATAATAAAGTCAGGTGATGTCATTCTTTTCATTGACGAAGTTCATACACTTGTTCAATCAG GGACAAGTGGGAAAGGAAATAAGGGATCTGGCCTTGACATTTCTAATTTACTTAAACCTGCACTTGGAAGGGGTCAATTTCAGTGTATTGCATCTACCAC CATAGACGAATACAGGCTTCATTTTGAAAAAGATAAGGCATTGGCACGAAGATTTCAACCTGTTTGGGTTGACGAGCCAAGTGAGGATGACGCAGTTAAG ATACTTATGGGTCTACGCGAGAAATACGAGGCACATCACAAATGCAGATTTACTGAAGATGCCATAAAGGCTGCAGTTAATTTGTCATCAAGATACATAT GTGATAGGTATCTACCTGATAAAGCGATTGACCTCATTGATGAAGCAGGAAGTAGAGCTCATATTGACGACTTTAAGAGGAAAAAGGAACTAGACAATTG CGTACTTTTGAAGAGCCCCACTGATTACTGGCAAGAAATTAGGGATGTCCAGGCCATGCATGAAATGGAGAGCAAACTTAAATACTATGGCACTTCTAGC ATTGATGATACTAGTGAACTTATAGTGGACTCATATTTACCTTCTGAAGCCAATGATAACGAACCTGTAGTAGTTGGACCAGAAGATATAGCAACTGTTG CTTCCATTTGGTCAGGAATTCCTGTTCAGCAGCTCTCTGTTGATCAAAGAACTCTGCTCCTAGATCTTAATAATCAACTTCGCAAACGTGTGATTGGACA AGACGAGGCTGTTCTTGCCATTTCTCGAGCCGTGAAGAGATCACGGGTTGGCCTTAAGGATCCTGATAGACCCATAGCTGCAATGCTATTCTGTGGCCCA ACTGGGGTTGGGAAAACTGAACTTGCAAAATCTTTGGCGGCATGCTACTTCGGATCAGTAAGATTTTACACATAATATATGATTTAGCATTAACAATTAG AAAGTGTTCTTTTTGTAAAAAATGAGGACCATTTCCCCCCTGCTTTTACATAATATGCATCTATTTGGTTGGAATGCTGATGTGAAATTAAACCCTTTAG AAATCTACTATTTTGTAATGAAAATTGAATTGGGGATAATTTTGTAGGAAAAGTTACACATTACAAGGATTTAAATATAAAAGTATAAAATAACAATACC TAGACTATTAATGATATCGGCAATATAATTCAGTTCACCTTATGGAGTAGTTTTTTTTCCTCGCTGTTAGGGTCCAATCATAAGGTATATCACATGAGTG CCACATCGGAAGGATGTGATTTTTGTATGGGTTTATACGGCCTTCTGCTCTTGAACCCTAAGGCCTAGCTTTTGTGGTATGGTTTTCAGAACGTCTATAT CAATTGGTATCAGACCTTTTCCGCCGAGTCTATTGATTGCAAACACGATGGTGATGTTAGCATTGCCTATTTGCCCAAGACTAGTCGGAGAGCTAGTGCG CCACCAGCTTGTGTGGGCAAGTTGGCCGATGTTCATGACTTATTGTTATCAATGATCACCTGAACAGGAATGGAAGGACCACATATTTCCTGTTGCTTTT CTTCTTTGTTTTTTTGGACTACAATGATTATGCTATGGTTGATGCATGCCACATTAATTGTTTATATATAGTTTTTCTTATTATTATTACTATTTTCAGG AGGCTGCCATGATAAGATTAGACATGAGTGAATATATGGAACGGCATACCGTGAGCAAATTGATAGGATCACCCCCAGGTTATGTTGGTTATGGAGAGGG GGGCATTTTAACCGAAGCTATTAGAAGAAAACCATTCACACTGTTATTGCTTGATGAAATAGAGAAAGCTCATCCGGATATATTCAACATTCTTCTTCAA TTGTTAGAAGATGGGCAGCTTACGGATTCTCAGGTTTGTGAATGCTGCTGCAAATCTTAACTTAGTAGGATTGTCAATAAGCTTCGAGATGCAAAACTTT TTCCGTGAAATTGCATTTTTTCTTCATTGCTTCTTTGCCAAGTAAAAGCGAACACTTTATGAATAAAATTATGGACTTTATACTACCTGTGTCCTGAATT TTTCTTTTTTGATGTTTGTAAAACTGGCTCTAACAGGGTAGAAAAGTTTCATTTAAAAATGCATTGGTAGTGATGACTTCGAATGTGGGGTCTAGTGCCA TTTCGAAGGGCCGGCACAACTCCATAGGGTTCTTGATTTCAGATGACAAGTCTACATCTTATAATGGCATGAAATCAATGGTAATGGAAGAACTGAGGAC ATATTTTCGCCCAGAATTGCTTAACAGAATAGATGAAGTGGTAGTGTTTAAACCTCTTGAAAAGTCACAGGTTTGTGAATTTTGGTTATAAGTTAGCTCC ATGATGATAATCATCTAGAAGAGTCTTCCTCAGTATCATATTGAGCTATTTTTCTTTAGTCTATAACTTGATTTCTTCACATAAACTAATTTTTTAACTA TACCAGGTAGAAGTAGAACTAATCTCTTTGCGTAGAAGTAGAACTAATCTCTTTGCAATTGATAAACTAGGTGACAATTTTTGGTACTAGTAATTCAAAT TGTGGACAGCATGACATGACATGATGCGGCTGCAATATTGTGGTTGCAGGGGTCACCAACCACATCACACCATAATTGCGGTGTAACACCGAATCACAAT TATGTAGCCCATTAGGCCGCAATGCAACTACATTGGATCGCATTTGGGCTGTATCATGCTACAACGCAACCACATCTGGCCGCATCAATTTCAAAAATAA TTTTTTAATCACAGAATAATTTACATTGTAACTACTTCAATCTGCATCGCAACGGCTTTAATGACTGCAATGCGCCAGTGATTCAAATTATGGACAACAC ATGATGCAGCTACAATATTGTGGCTATTGTGGTCATCACAACTACATCATACCGCAATTGCGGTGTGACACCGAAACACAATCATGGGCAATGCAATCGC ATCAGGTTGCATTTAGGCTGCATCGTGCCACAACACAACCACATCTGGCCACATTAGACCGCATTGATTTCAAAAATAATTTTTTTAATCGCAGAATAAT TTACACTGTAACATTGCAATATGCATTGCAAAGACCATAATGATTGCAATGCAATAACCGTGACCGTAATTACCACCGCAACTGTAATTTAAAACACTGG TAGATAAATTAATGTGTTTTATTCATTCATTGATTTTGTTACTTTTATTACAGTTGCTCCAAATATTGGATATGCTGCTTCAAGACCTAAAGAAAAGGGT CATGACCCTAGGAATTGATTTAAAGGTGTCAGAATCAGTTAAGAACCTTGTATGCCAACAAGGTTATAACCCAACATATGGTGCCAGGCCTTTAAGGAGG GCTATTACATCAATAATTGAAGACCCCTTGAGTGAAGCATTCTTAGTTGGAAAGTGCAAGCAAGGTGACACTGTCTTCATTGATTTGGATTCCAATGGTA ACACCATTGTTACAAATAATATTGATCAGATTGTGAACTTATCTGATACAAATCATCCATGTAATTAACAATTGTATAGAAGTAGTATGATAGGTATACA TATATAATTACACATGTATTGAAGTTGTTTTGGCCCTTGAAGCTAGCTTAGGAAGTTTATATAATGTAATTAGCTCATCCATCATTCTTTGAAATTTATG AAAATATATCCATATTCTCTTATCTTGCATATTTCTACTACTTTAATTTGAAATCAAAA BLAST |
Tissue | flowers |
Gene name | LI_gene_34864; |
Additional information | details; |
FPAB | abscising flower pedicels |
FPNAB | non-abscising flower pedicels |
LF1 | lower flowers stage 1 |
LF2 | lower flowers stage 2 |
LF3 | lower flowers stage 3 |
LF4 | lower flowers stage 4 |
UF1 | upper flowers stage 1 |
UF2 | upper flowers stage 2 |
UF3 | upper flowers stage 3 |
UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_180124
Blastp | Chaperone protein ClpD, chloroplastic from Arabidopsis with 72.33% of identity |
---|---|
Blastx | Chaperone protein ClpD, chloroplastic from Arabidopsis with 69.77% of identity |
Eggnog | ATP-dependent CLP protease ATP-binding subunit(COG0542) |
Kegg | Link to kegg annotations (AT5G51070) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019429737.1) |
Pfam | ATPase family associated with various cellular activities (AAA) (PF00004.28) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |