| Id Trinity | FTRINITY_DN53718_c2_g1_i1 |
|---|---|
| Name Transcript | Ll_transcript_123012 |
| Sequence | CCACTTACTTGGTTGCAAATAACGTGCGTACATTTTTCAAAACACCCGCCTCAACCCGATAACGGTGGAGAAGCTCGTAACCGAAGACAGAAAAGATAAA AAATGGCATCGGTGACGGTTGCGGCGGCGTCAATGTTGTTATCTGGTGGCTGCCGGAGCTTCCGCTTAACTGCGGCAGCGCGCGCTCTTGGAATCTCTCC CTCAGCTCTTGTCAAGCACTACAATAACCACGCGCCGAGTCAGTGTTATCGAAGTTCACATAACAGTAACACTATACTTGCCGTTGAAACTAACTCCTCA ACAATCGATACCACACCTTCTTCGGAAAGCTACCAAATCTATGATCGATTACTTCCATGTCCATCGCACAAATCTCCACCAAGAATTGAGCACTTAGTTG TATCAGAAGAAGGATCCGTGTTAGAATTTATTTGCAAAGCACTCGATCTTCCTCCTCTGTATGTTTCAGATTTAATTCAATTTGGAGCTGTACACTACGC TCTTGTATGTCCACAACCTCCTCCTAATGCTACAGAAGAGCAAATTAGGACATTCAAAGAAGTAACTGATCCATCGGTTTTGCGAAAAAGAACTTCAATC AAGGGGAAAACTGTACGAGAGGCACAAAAGACTTTTCGTATAACCAGTGTGGATCAATTTGTTGAACCAGGAATGTACATACGAGTTCATGTACATCCTA AACGCTTTCCTAGGTGCTATGAAATTGACTGGAGATCAAGGATAATTGCTGTGGCAGAATCGTATGTAGTTTTGGATAAACCTGCTGGTACATCAGTAGG TGGCACTACTGACAACATTGAAGAAAGTTGTGCTACCTTTGCAACTCGTGCCTTGGGACTTACAACCCCTTTGATGACTACCCATCAGATTGATAATTGC ACTGAAGGCTGTGTGGTGTTAGCTAGGACCAAAGAGTATTGCTCTGTGTTTCATGGCAAAATCCGTGAGAAAAAAGTGAAGAAGCTCTATCTTGCTCTTG CTGCTTCTCCTTTGCCAACTGGAATCATTACCCATTATATGCGTCCTTATAACATGGCTCCTCGACTTATTTCTGAAGATTTTATTAAGGGATGGCCTCT TTGTCAACTTGAGGTCATGGAATGCAGAAGGGTTCCCTGGCCAAGTACTGTTATTCAGGGCAAATACTGTGTGGAAGACTGTGGATGGCCTTCCCAAGAT TATGCTTATGAGTGTACAATCAATCTTCTTACTGGTCGAACTCATCAGATCCGAGCTCAATTTGCTGCCTATAAGGCACCATTAATTGGTGATTCTATGT ATATGCCAGCTGCAATCGCAGAGATGGCTAACCCTGGACTTAATCCATTTGGAAAATACAAGAAAGAATTCAGCTGTGAGAATGAAAAAGAAACCGCTGT TATAAATTGGACTGCACAACATGGAAAAGAACCGGGTGTTGCAATTGGTCTTCAGGCATGTCAAATTTCATGGGATGATGGTGAACACTTTTACAATGCC GGCTCGCCTTGGTGGAGGAGTGAAACTGCTTGAAATGTGTGCTTTATGGATTGATATAAATATTCAAAAGACAAGAAGATCAAGTGGTGATAGACCATTT AATGTTGGTTTGTCGTCCAATGGAGTAAGCTTGCCAGATTTTCTTCAAGTAAGGAAAAAAGGAAGACGTGTGGTTGTGAAACACTGTCATATGCTGGAGA ACCTTGTGACACCCTTTCTACCAAAGCAACTCTGAACAGGTAAGCCAGATAGGATAGGTTATTCACGAGGTAAGCCATTTCCATAAATAGAGAGAATTTA GTTTATTATTTTACTTTGAGATTGAAGAACTTAAAAAATGTCATATATTAATGGAAATACAGCTGACTGAGATACTATAATGTGGTAATATTGCCTTAAC CTCACCTCAAAATGTATGTAATTTGCTTTACTGTTCTGTCATATTTTGGCATGGGGCCTTGGGTTGCTGCATATTTGGATTCACCTTGAAATTTAAAAGG AC BLAST |
| Tissue | flowers |
| Gene name | LI_gene_36209; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_123012
| Blastp | RNA pseudouridine synthase 6, chloroplastic from Arabidopsis with 66.53% of identity |
|---|---|
| Blastx | RNA pseudouridine synthase 6, chloroplastic from Arabidopsis with 66.53% of identity |
| Eggnog | pseudouridine synthase activity(COG0564) |
| Kegg | Link to kegg annotations (AT4G21770) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019418851.1) |
| Pfam | RNA pseudouridylate synthase (PF00849.21) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |