Ll_transcript_24688

• Id Trinity: FTRINITY_DN53853_c8_g2_i3
• Name Transcript: Ll_transcript_24688
• Sequence: CAAAAATCTCAAAACCCTAAACCCTAATTTTCTACTTATAAAAACAACAACATCTATAATCTCTTTTCTTCATTCTCACCACTTCCATAAACCCTTTCTA GCTGCAACCTTCTGTTTTTCCAAGATGGCTATTCCTAGAGGTCGTGGTGGTTCTGGTGGAGGTTTCAGGGGTAGAGGTGGTGGTGACAGAGGTAGAGGTA GAGGTTTTGGAGGCAGAGGAGGAGACAGAGGTGGCACCCCATTCAAGCCCAGAGGTGGTGGCAGAGGTGGTGCAAGAGGTGGCCGTGGAGGAAGAGGTGG CAGAGGAGGTGGAATGAAGGGAGGGAACAAGGTTGTTGTTGAGCCTCATAGACATGAAGGTATTTTCATTGCTAAGGGTAAAGAAGATGCACTTGTTACT AAGAATCTTGTTCCTGGTGAAGCTGTTTACAATGAGAAAAGAATCACTGTGCAGAAGGAAGATGGAACAAAAGAAGAGTACAGAATTTGGAATCCATTTC GCTCAAAGTTGGCTGCTGCTATTCTTGGTGGTGTTGACAACATTTGGATTAAACCTGGAGCTCGAGTCCTGTACCTCGGAGCTGCTTCCGGAACAACCGT CTCTCACGTGTCGGACATTGTTGGCCCGACAGGAGTTGTCTATGCAGTAGAATTCTCTCATAGAAGTGGCCGTGACTTGGTCAACATGGCGAAGAAGCGT ACCAATGTCATACCAATCATCGAGGATGCTAGACATCCAGCGAAATACAGGATGTTGGTTGGCATGGTAGATGTGATATTCTCTGATGTTGCTCAACCTG ATCAGGTGTGGCTTTTAAGTGTTTACTTATGTACTCTTCGTCCTAATATTTATCTCCGATTCTTTTGTTATTTTCTGCTCTTTGTATTTGTAATTTTAAA TTTCAGGTCAGATAACTCTTCATACCACTTATGCAATGTAGTTTATGATTTTTGTTCATGTCCAATTATTTGATATCTCTGCTATTGGTTTGTTTATACT CTTTTTTTTTGGATATTCTAGTTATTTATACATTTTAATTGTTTTGTCCTTTAGTTGTTGTCCTTATTATTTACATTGAGCTATTGTTTTTTTATATTAA TTGTGTTCGTTATTATATTTTAAGTATTAAAAACAGGTGCTTTTACAACCTCTTTTTAATGCTTTCCACTTTCCAAAACTTGTATTTTTTGTTTTAGAAC ATGTTTTCTTTATTTTTTTGTCGTATTATTTTCCACATAATGTGATTGATTATCTATGCATATGATGATTTACTCGGATTCCCCTTCAAGACATCTTGGA TGATGCAGACCCGAGATTCTGATGCGTACCAATTTTTGTTTTGCCAATTTTTGTTTTAACTATTTTCTTTAGCTGTCATTGATGTATTGTTTTTGTATAT TTAGTGTTCCTTATTGTATATAAGTATTAAAAGCTTGTTTTTTAAAATTCATTTTAAACATTTTCCAATTTAAAAAACTTTTGTATTTTATGATCCATAA TCCATTTCTTTTTAAATTATCTTATTTTTTCCTTGTTAGTCGAATTTATACACTGTGTTTGATTATCTATGCATCTGATGATTTACTCGGATTCCCCTTC AAGACATCTTGGATGATGCAGACCCGAGATTCTGATGCGAGCCAATATTTGTATTGAGTTTATTTTTTTCTTTGAAATTGACTATATATATGGTTCAATA TTTACTGTCCCTACCTTTTGTGCATTTACTACTTGCAAGTTTTTACTTGCACTGTTTCATTTTGTGTTCATCTTTGTTTTGTTATGTTTCTGTGATTTTC TATACTGTCCCCCTCTCCTTGAATTCCTACGATTTCCGTCGCAACAAAACGTTTTGTACCCATGTTGAAACACCAATGAGTCTGAATATCTGTATAGTTA TATGTTATTTTGATTTCTATTGCAGGCTAGGATTTTGGGTCTTAATGCTTCATACTATCTCAAGTCTGGTGGTCATTTCGTTATTTCAATCAAGGCAAAT TGCATAGACTCAACAGTCCCAGCAGAGACAGTGTTTGCAAGTGAAGTGAACAAGCTGAAAGCAGATCAATTTAAGCCATTTGAGCAAGTTACTCTTGAGC CATTTGAGCGTGACCATGCTTGTGTTGTTGGTGGATACAGAGTGGCCAAGAAGAAGAAAGATGCTGAATAAGTAGATTGCTGTTACTACAATCATGTAAT ATCACTGGTGTTTGAATTCTAGAACATGTTAAATTTTGTTAGCTTTTATGGAGATTATTATTGTTATGTTGTATGATACTCTATATGGTTATCCAAAATT GGTTTTACATTTTATGCTTTTTAATCACTAGTTGCTTCTAGAGTTTTTGCTGGCTATATTACTGGAGTTTTACTGTAACCATAATTGTTAAATTTTATTA GTTTTTATCTCTTTTCCAAGGAGCTATATCTATAATTGGTAATTTGGGCTAAGTCTAAGTAGCCCGCTCCTACATTTTGGGTAGATGTTGCATGAAAAAT GTGTTCATCCGTCCTAAAAGCTGAACATGCCCTTTTGATCCACGTGTCGTTTCGGC
• Tissue: flowers
• Gene name: LI_gene_37417;
• Additional information: details;

Expression of Ll_transcript_24688

FPKM

• FPAB: 0.3
• FPNAB: 0.8
• LF1: 0.6
• LF2: 0.3
• LF3: 0.6
• LF4: 1.2
• UF1: 0.4
• UF2: 0.2
• UF3: 0.8
• UF4: 0.8

Labels

• FPAB: abscising flower pedicels
• FPNAB   : non-abscising flower pedicels
• LF1: lower flowers stage 1
• LF2: lower flowers stage 2
• LF3: lower flowers stage 3
• LF4: lower flowers stage 4
• UF1: upper flowers stage 1
• UF2: upper flowers stage 2
• UF3: upper flowers stage 3
• UF4: upper flowers stage 4

Annotations of Ll_transcript_24688

• Blastp: Mediator of RNA polymerase II transcription subunit 36a from Arabidopsis with 90% of identity
• Blastx: Probable mediator of RNA polymerase II transcription subunit 36b from Arabidopsis with 81.28% of identity
• Eggnog: Involved in pre-rRNA and tRNA processing. Utilizes the methyl donor S-adenosyl-L-methionine to catalyze the site-specific 2'-hydroxyl methylation of ribose moieties in rRNA and tRNA. Site specificity is provided by a guide RNA that base pairs with the substrate. Methylation occurs at a characteristic distance from the sequence involved in base pairing with the guide RNA (By similarity)(COG1889)
• Kegg: Link to kegg annotations (AT4G25630)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_020968740.1)
• Pfam: Fibrillarin (PF01269.16)
• Rfam: snoR60 (RF00339)
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;