Id Trinity | FTRINITY_DN53946_c0_g1_i2 |
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Name Transcript | Ll_transcript_90004 |
Sequence | ACTATATAAGCCTTGATCTTATTTATCTAGTTTGGTAAAGTAGCGTAGACGACGAACCGAAACGAAATTTCCAACCTTCATTCCAAAATTTTCATGTCCA TCTTGCCCTCACAAACCCAAACAGCACCTTCATCTTCATCATCTTCATCTTCTTCAAACCCTAATTCCCAACATGGATTTTCAATCCCTTCTTCTTCCTC CATCCTCGACCTTCCTCTCGGATCCCTCCAGATCCACGATTCCCATATTCCAGGTCCATCAATTCCTGCTGCAGAAGATTCTGGTGGAACTTCCGAAAAG GTGACAGAATATGGGTCTCCAAGTGGTTTGGAGGCTTCATCTCAGCAAAACTCTAGAACACGTTCTAGGAGTCACTCAGGAAGACGAACGTCTGGATCAT CTCAATCAGTGGGGAACACAACAGGAACAACTTCTTCTCAAAGAAGTCAACAGACTCTTGGGTCTGTAAATTCTCATGGAAACTCACCTTTGGCAGGAAG GAAGTCTCAGATGGTGAATGGTAATTACTTGCTGAATTTTCAATATGATCCAATATCTCGTTCTCAGCCAAGGGGTCCTCCTCCTCCTCCACCCAGAAGG CAGCGAAAGAGAAAACCATACAACAAAGATTTGTTTTTGCAGGCAAATTACAAATTCATGGTGCTAGATTCAGGAAATTATTCAGCTGAGTCTATGGATC CAGATAAAATGTTGCAGTGGGAAGATATTATATGTGTGACTTATTCGACCCCCCTTCCAATTCAGTGTCCAATTTGTTTGGAGTATCCCCTCTGTCCACA AATAACCTCGTGTGGACATATTTTCTGTTTCCCATGTATTCTACAATACCTATTATTGGGTGAAGAGGATAACAAAGGTGAATGCTGGAAAAGGTGTCCT TTATGCTTTGTGATGGTATCTGTCAAAGATTTATATACCGTACACATATCAAATGTCAAACAGTATCAAGTAGGAGATAATATTGAGTTCACATTTTTAA CTCGAAAAAAGGATTCATTTACTCTGTCCCATAAAAATAAACAAGAGACAGATACGACATCATGTGGCAATGAAGATTTTTGTGATCCCTTTTCTAAGTT TACACTCACATCAGATGTAGACCTTTCAGTGAGACATGCAATCTCAGATCTAGATGGTTGGCTGGCCAGGGCTGATTCAGGTCTTGTTGATGACCTAGAG AAGCTTCCTTATGTTTGTGCTGCAATGCAGCAATTAAAGCAGAGAAAGAAGTATTGGAACGAGCACAGAGCTTGTGACAGTGAAAAATCTTCTAGGCTTA TTGATTATGGGCATCAGATACCATCAGCAGCTGTAAGTTTTATTGACACTGATGATGAAACCCATTCTAATGGATCAAGAACTTCCTCTACAGATTTCCA TGATCGAAGTAAGGGCATAATATTGGATAAACCAATTGCTGGGACCTCTCCGGATCAAATTTCGGATGTGGAGAAAGTTTTACCAGATCAGGAAATGAAT TTATCTTCATATGAGGAGAAAAATAGTATCCGAAGGCTTTCAAATGGTAGTGGAGATGTTAAGGAAGGTGACTCATACAATTTCTACCAGGTAATTGATG ACAATTGGTTTGTGTTATGTTTTTCTACACCCGTCTTGCCTGATATTTTCCTAATTGGATAGAGCAATTGTGTCATCATATGAACTATGCGCAATAATTT GACACTGTTTACACCAAAATGGGTATGAACTATATATAGAGAATTTAATGGAAATACGTGAAATAAGATGAAAGGATGAAAGGTTGTGCTATGTTTGAAT GATTAAGAAGGGAGGAAACAGAGAAGTGTTATGTGTTAAATTCCAATATGACCCTTAGAGATGTTTCTCAAGAAGCTGAATTATATTTTTCATTTTATTT TTTTGGACAAAATAAATGTATTAGGCTGAACACAAAGAAGGACAAGGGATGCTAATTGCAAAATAAAATGAATAGGGGATAAAGAGAACTAAAAAAATCA ATGAAGCAAAGCTATCCAATCTCTCAACATTTATGTAAGAAAAAAACCCTTTTAAGAAGACCATGGACTTTAAATAGTAAATGGCAAGTTTTTAAAACAA AACAATACAATACATTATCCCTCATTATCCTTCAATTTTTAAGGGAACACAGAGAGAGAGTTGGAGGGATAGTGGCAGTCCCTTCCCTTTTCCATTGATC CTAACTAGGGATCTCGTTTTTTTCTATCCGCTTTGCTTTCATTCCTCATTACATCTCCTAACAAACTCTTGAGGAAAATCAGAATGAATATCTGATTAAG AAAGCAGGACGCAGCATGTTATTCAAAGAAGTAAAACATAGTACAATAGTACTTCTTCAGCATTCCATATTTTTCGTGCATCTGCTCCCTTCCGTTGTAA CTGATTTTCTTAATTTCTTGTACGCAATGGTTGTTTCAAAACATTACTATTATTTTAGGAGGAATTAGCTAAGTGTCAAGATTTTGTTAAGGCTACACCA AATACTGTATTTGGATTATTGACCACTTAACCTGCATGACGGCTTTTAGTTATTTACCAAATTTTTAATCACAAGTGGAAAATTTGAGCTGATTCTATAT TATATTATTATCTTTGTGCACCAACAGTTGGAAGAGGTTGAGGTACGTGCAATGTGCATTATTTTTCGGATTAAATGCACATTATGTCTTTATTATTATT GTTAGTGGCATTCTGAAGATGTAGTATTGTACTATGTTTTACTAAGATTGAATGGTTTACTTATGCTGCTGTCTTCCAATTGTATCAGTGGATGCTGATA AATTTGTGGCTTGGTTATCCTCACTGACAACATGTTGCTTTTGAACTTGAATTACCCATTGGTTTTAAATCACGTCTATCTATTTTAAACTCATTTATGG ATTAGTCCCTCATGATTGTTATATGGGATATGGGATGCTGCTTTTAATTTTATTGGACAAATCTTGAATTCTTGATGCTTAAAAAATTTCTAATTATTTC CCCTTTACTGTTGACTTTTGGTTGTTACAATGCTCATGTCTATTTCAGGCTTGTGATGGTCAGCATGTAATTCTTCATACATTGAACATGAAAGTTTTAC TTCACCATTATGGGAGCTATGATAAGCTTCCACACAGGTTTGAACAAAATCAATTATATTTGTTCTGTGCACTTAGAAAGTAAATGGATACATGTGTGCT TATGTTTGAATTATATTATTGGCATAATGTGGAACTTCGATCTTTATGGGATATAAATTGAATTATCACGTGCCAATTTTGGATTTTGGTTTATGAACAT ATTTGCATGACACAACAAATCCTTTTAACTCCTGAAGTACTGTGCACATTCAGAATTAGGTCTGCTGTTGCTGAAAAATAGAATGTCAGACAAATTATTA AGATTTCACCACATGCTATTCTGGTTTATCAATATCTCATAACATATAAAAATTGAATTAAACATCTGCTATAGATTAAAATGATAGCATTCAATTCAAA TGAAGTTAGATCAACACATTATAGGATCATTCAAAAGAACCTTCCTTGAGAAGTTACAACACAAATCAAGGCATGTTTAGCTTTGATTAAATTTGGGAGA AAGTTGTTTTTTTTTTCCTAAAGTTCTATCAGTAAGATTTTGATTATAAGTTATTTTGAACACAAAAAAGAAGCTTATCCCCATCACAGTAATCCTTATT CCGCTAGGTGGGTTGGTTATATGGACCAATTGATGCAGTTGTATTCTATTGAACACCAAAATTTCAGGACATTATCTAAATTTGTATTTATTTCATGAGA AATGTGAGTATCTAAATTAGTCCATGTACCCATGCTATTTAGCATATTTGTATCACTGTACTTATGGTTGGTGTCTTGAGTGAACAACATCTTTGAGAGG AGCATTAGTGAGCTTTAATTGGCTTTTTTATTAGAGTCTATTGATTGCAGAATAAGTGGAAGGATTCTGCAATTGGAGGCAGTTACTCAGTCCGAGGCCA TGAGGAGGCGATATCGATTCATAAGCCATTTTCCGTTAACAACAACATTTCAGGTGTTTTTAAAGGGGAAATCTTTTTAGTTCCAAAATATTTTCTTATA ATTATTAATTTATGGTTGCTAATTTTTCAGCTTTGTGAAATTGATTTGAGTGATATACTGCCTCCTGAAGCACTGGCCCCATTTATGGATGAAATAAAGA AGCGTGCAAATCAGAGGAAGCAGCTTGCAAAGAAGGAACTAAAGGAAAAAATCAAGGCTGAAGCTGCTTCTACTTATTCTGTTACCATACCAACAAGTTA TCAGTTTGCTTCTCGTGATAATCCTCCTGTGTTCTCGATGGATGACTTTGGAGCTTTGGGAAATTCCGCTACGTCATCAAGTCCTCCAGTTGTCGGGGAG AGAAAATTGTTCTCAAATGTTACAAGGCTTGGCTTTGCTGCTGCTCATGATTCTCCTTCCCTTCAAATTCAAGAGACTGGAGGATCACATGATAACAATA CAACCACTGGGTCTTCTAGTGCAACAGGTTTGAGAAATGTGGAGGCACCATCATATTCCAATGTTACATCCAGAGCAGAATCTAATATAAGCTTGAATGC ACCGAAGACAAACGACGCAGGGAAGAGGGGAAAGAAACCAAATCGAGTTCTTCTCTCAACAGCTGGTGGCAGGCGCTATTGAAGACTCGGTCACAGTCTC TTGGTAAGATGACTCCCAACCTCACCCCACCCTATACCAAGCCAAATAAACAATTCCTACCTCTTTGAAGTGATTTCAGTGTGTAGTAATCAACCTTTAA TAGATGATATGTGTGTACTTCATGCTCCTCTTATTAACAGGCAGACATGTGAAGAGAGAATAAATGTTTAAGTATACACAATCTCTGTCAATCCATGACA ATTTAGGTTCAGTTGAATATTTACGTGGGTTTGTTGTTGACTACTTATTACGGTATGAGTAGAAATGAGTCGAGTCGAGTCAGACACTTGAAGTTCATAC TTATCCATGCATGAGAAGATTAGGTAAATGAGTCGAGTCGAGTCAGACACTTGAAGTTCATACTTACTGCATGAGAAGAATAGGTAAATGAGTCGAGTCG AGTCAGACACGTGAAGTTCATACTTAATGCATGA BLAST |
Tissue | flowers |
Gene name | LI_gene_38271; |
Additional information | details; |
FPAB | abscising flower pedicels |
FPNAB | non-abscising flower pedicels |
LF1 | lower flowers stage 1 |
LF2 | lower flowers stage 2 |
LF3 | lower flowers stage 3 |
LF4 | lower flowers stage 4 |
UF1 | upper flowers stage 1 |
UF2 | upper flowers stage 2 |
UF3 | upper flowers stage 3 |
UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_90004
Blastp | RING finger protein 10 from Xenopus with 40.11% of identity |
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Blastx | RING finger protein 10 from Xenopus with 37.78% of identity |
Eggnog | - |
Kegg | Link to kegg annotations (734904) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019447408.1) |
Pfam | Zinc finger, C3HC4 type (RING finger) (PF00097.24) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |