Ll_transcript_89937

• Id Trinity: FTRINITY_DN53993_c0_g1_i24
• Name Transcript: Ll_transcript_89937
• Sequence: GGGAGCTGAACCCACCTAACCTTTTATTAAATTTAGTGTAATGAGTGAAAGTAAGTAATATATATAAAACAAGGGAAAAACGAACGGTGGTGATATACCT CATTCTCTCATCTCAATCGTCTCCTTCTTCCTCTCTTCTCCAGCGTCCGATTCCTCTTCTTCTCTCACCGGATCTCTCTCTCTCTCTCTCTCTCTCCCGC CAAATACAAATCTCTCTCAGAATCTATGGCGGATGCACCGGGGAGCCCTGGCGGCGGAAGCCATGAGAGTGGGGACCACAGTCCACGCTCCAATATAAGG GAACAGGATAGGTACCTTCCGATCGCTAATATTAGCCGAATCATGAAGAAGGCGCTTCCCGCCAACGGAAAAATTGCGAAGGATGCGAAAGAAACTGTTC AGGAATGTGTTTCTGAATTCATCAGCTTCATTACCAGCGAGGCCTCTGATAAGTGTCAGAGAGAGAAAAGGAAGACTATTAATGGTGATGATTTGCTTTG GGCTATGGCTACTCTGGGTTTTGAGGATTATATTGATCCCTTGAAGATTTACCTCGGTCGATACAGAGAGATGGAGGGTGATACCAAGGGTTCAGCCAAG GGTGGAGAGTCATCTGCTAAGAAAGATCAACCAAATCCCAATGTTCAGCTTGCTCACCAAGGTTCTTTCTCACAAGGTGTTAGTTACACAAATTCTCAGG TAAAACTGCTCTCTCTTCATGTGCTTCTAGTCCGCTGGCATGTTGAGTGTTGAAAATGAAGAGGCTTAGGTGTCTTTTTAGACTGATTTTTAATTGCAAT ATTTGTTTCTATCATGAGGTACTTTATAGGTTTAATCCCTTTTCCTCTGACAGGCTTTTTATTTTAAGCTTATTGTAGTTAAAGTGATCCACACAAAGTT GGCTGTAACACCATTTTGAATTGATATTTAGAGAATATACTGACTGTTGAAAGTGTCCATCTTAGAATTAATGCCCGGCAATCTTAAAGTCTACACTATG AGTAGCTGTGTTTGGTTAGTACCTTGCATCGATGCACCCATTGAAGTCCTTGATGAAAAGTAGTGTGAATTACAGATTATTATTTACATTTAGTGACTCC ATCTCTTTCCTCTCACCCTCTTTCTGTGGTCCATCTTTAAAGGGTGGTTTTTCTGATCTGGTTGTAGACAGAGAATTGTTGTGGGAGATTCTTCCTCTTT AATGAATTGAACAATAAAAAGTATTGAAGTTGCCATGCCCCGTCAATTCTTTAACTTCTATTTTAAAAATTGCATTAGGAATTAATGAGGTTTGTAGATC CTATGGTGGTAGTTTGCTAGAGGTTTGTTAGTAGTTCAGATTCCAATCATGATAAATATTTTGGGTTAATTAGCCTTGACATGTTCACGATTTTATTAGC ATTAGTACGTAGTTGTAGTTTTTGGACTGTACTATCAGACATCAGTGTGTGGTATATATCTTTATTCTTATTTTTGTGCGATGAAATTTGTGGTTTGGAT GACTGGAGCTTTGCTCCCACTTGTTTTGCTACTGAAAATTATCTATGGTTTTGCTTAGCTAGGAACACATGGGATATTCTTCTGTGATTGTGTTATAAGA TCATGCAGTTCAACTTGGTTATAAGATTTACATTTGAAAAACAATTTGAAAGTAATTTCTTACCTAATTAATTATTAAATGGTGGAAGTGGTGATCTCAA AATGAACTTTTATTTGGATCCACTTTTCTCTATTAACCCAGTCATCTTGAATGTTACAACTTACAAGTCAAACTCATGAGGAGAGCACATTCCAGTTAAA TTGGGTGGAGAGCCTCTTGGCTTATATCCACATTGAGCCTCTATCTTTACTCGATATGAGACGGACATAAGCCCACTCCAAAAGACTGGCTCTATTGGGT GGGAGAGCTTCATTGCTTAAATAGCATGTTGACCCTGTGTTTTACTCTGTGTAACATAACATTGAGCATGCAACTTTAATTTAACTGACTACTCTCCTTG GTTTGTTAGTTATATGTTTGTTTAAGGAATTTATGTTAGCATAAGCAATAGAAGTTTCGTAGATAATGAATTTGTGATAGTAATTCTCACTTTTTTCTTG ATAAACCTTCAATCTCAGGGTCAACATATGATGGTTCCTATGCAAGGCCCAGAATAGGAGGTACCGACTCCAGCGATCCTTCTCCAACAGTTGTCATGTG TGTTTTCAATACCAGTGGAGCTTTAGTAAGCAACCTTCAGCTATTGAATGTATTTTTATGGTAGATGAATACTGACATAGGAGACATTGGTTCTTGTGTC TGGATATTTTTTAATCAAGGTTTGTATATTTATCTTTGGGGTAGAATTATTATTCCAAAGTTGTATTGTAAACTAAAGTTATCTATTTAGGAGCCCTGTT TGTTTGATTTGCAGCTTGGCAAAGACTGGAGAATTTATATATCTGGTTGTAAGCATAAATTGGTGTATTATTTCCCTTATTTGTTTTGTACAATAATGGA TGGATGGATTGGTTTTTTTAGAATATGTTCATCAAATATGATGGATAGTTTCTTTTAGCACAAGAGTTAGTTCAATTTATTGATACTAATACTATCATGT TTATCATTAATTCATTATTC
• Tissue: flowers
• Gene name: LI_gene_38743;
• Additional information: details;

Expression of Ll_transcript_89937

FPKM

• FPAB: 0.3
• FPNAB: 0.6
• LF1: 0.6
• LF2: 0.5
• LF3: 0.4
• LF4: 0.4
• UF1: 0.6
• UF2: 0.3
• UF3: 0.5
• UF4: 0.5

Labels

• FPAB: abscising flower pedicels
• FPNAB   : non-abscising flower pedicels
• LF1: lower flowers stage 1
• LF2: lower flowers stage 2
• LF3: lower flowers stage 3
• LF4: lower flowers stage 4
• UF1: upper flowers stage 1
• UF2: upper flowers stage 2
• UF3: upper flowers stage 3
• UF4: upper flowers stage 4

Annotations of Ll_transcript_89937

• Blastp: Nuclear transcription factor Y subunit B-10 from Arabidopsis with 81.63% of identity
• Blastx: Nuclear transcription factor Y subunit B-10 from Arabidopsis with 81.43% of identity
• Eggnog: Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling(COG2036)
• Kegg: Link to kegg annotations (AT3G53340)
• CantataDB: Link to cantataDB annotations (CNT0001277)
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_007162720.1)
• Pfam: Histone-like transcription factor (CBF/NF-Y) and archaeal histone (PF00808.22)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;