| Id Trinity | FTRINITY_DN54163_c0_g1_i8 |
|---|---|
| Name Transcript | Ll_transcript_44947 |
| Sequence | GTCAACAGGTCAAGTGGTGCTGTTATAGATATGTGGATTAAGGCAAAAGAGCTGGAGGCAAATACTGAGTATTACATTGAGTTGTTAGCAAAAGGAATAG GAAAATCAAAAGAAGAAATTGCTAAAGATGTCCAGAGGCCTAAATATTTCCAAGCACAGGAAGCCATAGAGTACGGTATTGCCGACAAAATCATTGATTC AAGGGATGCTACATTTGATAAGCGGAATTATGATGAAATGGTTGGTCAATCAAGAGCAACAAGGAGACAAGCTGGTGGCAATCCTCAAGTTGCTCCAACA GGATTTAGGTAATCATACAAAGCATGGATTCACTTATTGTGCTTCAAATCCAATGCCTTAAAAGGGTCTTGTTGTCAGGCATCAATCTTGTTCTTATATA AACAAGGCCAAATGGAATAAAATCCTGATAAGTGTATAAGCTTTGTACCTTGGTTCTCGGCGTAGTTTGTAGTATACTTAAATTGAATTACTTATGCTTA GTTTCAACAACTAAAGAAAATGACCAGGGCTCAGGGATTATTTTCTTTTGTTGTATATACTGAACTGTTACCGATACAACAGACTTCATAAGATCACTGC ATTGTCTACAACACTCCTTTGTTTCATTTTTTCCTTTATGACATTTTCATTTTCTCTAAAGTACCTTCGAGCACACACTCCCCCCACATTTTCCGATTTC ATTGCTCATTACCTTGCATCCAACCATGAGTAATTTTGTTGTAGTTATCATTATTTGCTTTTTTTATTTCTATTTTATTTATTGGCAATGCTATATTTGT TGAGATTCGATAAAGTTTTATGTTGGTTATTGACTCCTAACACAACATTTATTTTTTACTTAGACTTCACCCTAGTTATGTATAGCGCCATTTTACCCTT GTAGTTGACCTGTCATATGATCGGAAAAGGTTTAGTTCTGCGTTGAAAGCCACATTTACATTGATTGGATTCAAGCTAGTTATTCAATCACAGATATGTT GGCTTCAATGGCGGAGGCTGCGTCTTTCCATAATGCTGACTCGGAAATTGAGGTTGATGCACAACACAGCATATCAGTTGTTTGATCAATTGCCTGAGAG AGAGATATACATTTTGCTACAATGACACGATTGGAGGACTTGCAATTCATGGATGATTATGGTTACCATGTTTGCGTGTTCTCATGTTGGGTTGGTTGAG GGTTTGTAAATTTTAGAGTCAATCAAGGAGGTCCATGCTATGGAATCAAAACTTGATCCTTATGGAATGCGTAATCGATCTTGGTCGAGCCGCCGGGAAA TTAAAAGAGGCAGAGATGAGATCACAAGACATGCGTATGAAACCGAAAGTAGTTTTAAGAAGGTCTTTACTAGGAGCAGCAAGACTTCCTTCATGGCAAT GTAAAGATATGAGAAACTTATCCATTTTATGAATAAATATATTTGAAGATTGGGGAGATAAATGCAAGAGTACAAAAATATGGTTACAAGCCAAGAACAT GAGATGTATTGTATTCTCTAATTTATAAGTAAGCAGATGAATACATGAGATGTATTGTAGTTAAGATGCATTTCAACACAATTCGCTCCAAATGGGAATT CACTAGAACTATAATCAATCGAAATGAATCTTAATTTCAGCGCTATAGAGATGTTTTTATTTATTTATCTCTTATTCATGAAACACCCAGCATTAAATCA AAAGTTTGGACTTTCGCTGAGTCGAGCTTAGAAGATTCAAAATCAAGTGGATAAAACTTTACCAATACTTTTTATTTTAAATCCGGCAAGTAAAACATTG CCTGGGGAACCTTGTTACTAGGCAATATGCATAGATATAAGTATATACGTATCATTTTTTCTATATTTATTTTTGAATAAAAAGATGTATGTAATAATAA TGTATGAGTTTTATACATTATTTTTGCATCATTCAGTATTTATATTTAATCATCACTAACTCTTTCAGAAAATAATCTAAATTAATATTATAATTTTTAT TTTGATAACAAATAATAGATTGCAAAAATACAAACTTAACTGGCTCTATAACAAAGCCCGGGGTTACGCTTACGCTCCGTCTTTCTAACCCGGCCCACGA ATAATATTTTGGTTTAATTTGTGTCCCGTTCTGGAATTAAATAAGAAAAAGAAAAAAGACTCAACCTATTATTATTATTATTATCAACAAAAACACAATC TCTGA BLAST |
| Tissue | flowers |
| Gene name | LI_gene_40279; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_44947
| Blastp | ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic from Arabidopsis with 69.9% of identity |
|---|---|
| Blastx | ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic from Arabidopsis with 69.9% of identity |
| Eggnog | Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins (By similarity)(COG0740) |
| Kegg | Link to kegg annotations (AT1G49970) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019428782.1) |
| Pfam | Clp protease (PF00574.22) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |